Locus 5558

Sequence ID X_DroMel_CAF1
Location 14,373,820 – 14,373,918
Length 98
Max. P 0.936532
window9019

overview

Window 9

Location 14,373,820 – 14,373,918
Length 98
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 78.23
Mean single sequence MFE -24.12
Consensus MFE -17.16
Energy contribution -16.64
Covariance contribution -0.52
Combinations/Pair 1.24
Mean z-score -1.96
Structure conservation index 0.71
SVM decision value 1.25
SVM RNA-class probability 0.936532
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14373820 98 - 22224390
UUUAAAGGCCACUAAUCCCAGAAACGAAAGUUCCACCAG------CUCAUAUAUCAUUGGUGUGAUGUUCGGGAUUAGAAAACUCUGAAUAAGUGUAUUCAUUA
...........((((((((.(((((....))((((((((------...........)))))).))..))))))))))).......((((((....))))))... ( -24.20)
>DroSec_CAF1 89977 103 - 1
UUUAAAGGCCACUAAUCCCAGAAAUGAAAGUUCUACUAGUC-AUGCUCAUAUAUUAUUGGGGUGAUGUUCGGGAUUAGAAAACUCUGAAUAAGUGUAUUCAUUA
...........((((((((((((.(....)))))....(((-((.((((........)))))))))....)))))))).......((((((....))))))... ( -23.50)
>DroSim_CAF1 84117 103 - 1
UUUAAAGGCCACUAAUCCCAGAAAUGAAAGUUCUACCAGUC-AUGCUCAUAUAUCAUUGGUGUGAUGUUCGGGAUUAGAAAACUCUGAAUAAGUGUAUUCAUUA
...........(((((((((....)(((.(((.(((((((.-(((......))).))))))).))).))))))))))).......((((((....))))))... ( -24.10)
>DroEre_CAF1 81160 85 - 1
UUUAAAGGCCACUAAUCCCGGAAAUGGAAGUUCCA---GCC-AGGCGAGUACAUCACUGGCGUGAUGUACG-GAUUAGAAAACUCCGAGU--------------
...........(((((((.((...(((.....)))---.))-......(((((((((....))))))))))-))))))............-------------- ( -28.50)
>DroYak_CAF1 91482 99 - 1
UUUAAAGGCUACUAAUGCCAGAAACGAAAGUUGCU---CAUAUGGCUCAUAUAUCAUUGGUGUGAUGUACGGGAUUAGAAAACUGUGAAUAAA--UAUUUAGGA
((((.((..(.(((((.((.(((((....)))(((---.....))))).((((((((....)))))))).)).))))).)..)).))))....--......... ( -20.30)
>consensus
UUUAAAGGCCACUAAUCCCAGAAAUGAAAGUUCCAC_AGUC_AGGCUCAUAUAUCAUUGGUGUGAUGUUCGGGAUUAGAAAACUCUGAAUAAGUGUAUUCAUUA
((((.((....((((((((.(.(((....))).)................(((((((....)))))))..))))))))....)).))))............... (-17.16 = -16.64 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:52 2006