Locus 5556

Sequence ID X_DroMel_CAF1
Location 14,366,945 – 14,367,044
Length 99
Max. P 0.500000
window9017

overview

Window 7

Location 14,366,945 – 14,367,044
Length 99
Sequences 4
Columns 102
Reading direction forward
Mean pairwise identity 84.74
Mean single sequence MFE -25.08
Consensus MFE -16.02
Energy contribution -17.52
Covariance contribution 1.50
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.64
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14366945 99 + 22224390
GCAGUGGGUAAUUAUAAUGCUUUAAGGGCUGUCAGCACUUGAGGCGUUUAAUGUUGUACUGAGUUUUGCACUCGGAAUAAAAAUCAUCAGAAACCAC---AG
...((((...((((.(((((((((((.((.....)).))))))))))))))).((((.((((((.....)))))).)))).............))))---.. ( -29.20)
>DroSec_CAF1 81263 99 + 1
GCAGUGGGUAAUUAUAAUGCUUUAAGGGCUGUCAGCACUUGAGGCGUUCAAUGUCGCACUGAAUUUUGCACUCGGAAUAAAAAUUAUUGGAAACCAC---AA
...((((......(((((((((((((.((.....)).))))))))((((...((.(((........)))))...))))....)))))......))))---.. ( -26.00)
>DroSim_CAF1 75493 99 + 1
GCAGUGGGUAAUUAUAAUGCUUUAAGGGCUGUCAGCACUUGAGGCGUUCAAUAUCGCACUGAAUUUUGCACUCGGAAUAAAAAUCAUUGGAAACCAC---AG
.(((((((((.....(((((((((((.((.....)).)))))))))))...)))).))))).((((((....))))))..........(....)...---.. ( -24.20)
>DroYak_CAF1 83792 90 + 1
GCAGUGGGUAAUUAUUAUGCUUUAAGGGCUGUCAGCACUGGAG------------GCACCGAAUUUUGCACUCGGAAUAAAAAUGAUCAGAAAUGAUUAGAA
(.((((.(.((((....((((((.((.((.....)).)).)))------------)))...)))).).)))))..........((((((....))))))... ( -20.90)
>consensus
GCAGUGGGUAAUUAUAAUGCUUUAAGGGCUGUCAGCACUUGAGGCGUUCAAUGUCGCACUGAAUUUUGCACUCGGAAUAAAAAUCAUCAGAAACCAC___AA
.(((((.(.......(((((((((((.((.....)).)))))))))))......).))))).((((((....))))))........................ (-16.02 = -17.52 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:50 2006