Locus 5554

Sequence ID X_DroMel_CAF1
Location 14,366,040 – 14,366,158
Length 118
Max. P 0.627776
window9014

overview

Window 4

Location 14,366,040 – 14,366,158
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 76.22
Mean single sequence MFE -20.93
Consensus MFE -14.08
Energy contribution -14.96
Covariance contribution 0.88
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.67
SVM decision value 0.19
SVM RNA-class probability 0.627776
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14366040 118 - 22224390
UCAUCCCCAUCCCCAAUCCCAUUCCCAUCGGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAAAAU
.............................((.(((...((......))(((((..(((((((((.....)))))).)))..))))).................))))).......... ( -22.50)
>DroSec_CAF1 80342 118 - 1
UCAUCCUCAUCCCCAUUCCAAUUCCCAUCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAAU
..................(((((....((((......)))).......(((((..(((((((((.....)))))).)))..)))))........)))))................... ( -21.30)
>DroEre_CAF1 73822 106 - 1
UCGUCCU------------UAUUUUCAGCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAAC
.....((------------.......(((.((((....((......))(((((..(((((((((.....)))))).)))..)))))..........))))...))).......))... ( -21.14)
>DroYak_CAF1 82803 106 - 1
CCAUCCU------------CAUCGUCAUCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAAU
.......------------..((....((((......))))...(((.(((((..(((((((((.....)))))).)))..)))))(((.......)))....)))........)).. ( -20.70)
>DroAna_CAF1 149687 90 - 1
--------------------------AUC--CCGGCAAGGAUAUCCCGGCACCAGGACAGUGGAUUAUUUCCAUUCAUUUUGAUGACGAAAAUCAAUUGCAUAUCCGAGCUUUAAAAU
--------------------------...--..(((..((((((((.(....).))).((((((.....))))))....(((((.......))))).....)))))..)))....... ( -19.00)
>consensus
UCAUCCU____________CAUUCCCAUCCGCAGCCACGGAAUUAGCCUCGUCCUGACAGUGGAUUACUUCCACUCGUUUUGAUGACAAAAAUCAAUUGCAUCGCUCCACUUUAGAAU
..............................((((....((......))(((((..(((((((((.....)))))).)))..)))))..........)))).................. (-14.08 = -14.96 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:47 2006