Locus 5552

Sequence ID X_DroMel_CAF1
Location 14,360,210 – 14,360,312
Length 102
Max. P 0.644479
window9011

overview

Window 1

Location 14,360,210 – 14,360,312
Length 102
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 85.70
Mean single sequence MFE -43.84
Consensus MFE -26.00
Energy contribution -26.32
Covariance contribution 0.32
Combinations/Pair 1.08
Mean z-score -2.53
Structure conservation index 0.59
SVM decision value 0.23
SVM RNA-class probability 0.644479
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14360210 102 + 22224390
GGGGUAGAGGGGGAGGCA---------GAGCCACAGGAUGUAGCGGCAAUCCUGGCAUUGUUGAACCAGCAAUAGUGUCCUUCUUUCCAACAAUCGCCCAACCUUUGUCCC
(((..(((((..(.(((.---------......((((((((....)).))))))(((((((((......))))))))).................))))..)))))..))) ( -37.80)
>DroSec_CAF1 74633 101 + 1
GGG-ACGAGGGGGAGGCG---------GGGCCACAGGAUGUAGAGGCAAUCCUGACAUUGUUGAACCAGCAAUAGUGGCCUUCUUUCCAAGAAUCGCCCAACCUUUGUCCC
(((-(((((((...((((---------((((((((((((((....)).)))))...(((((((...))))))).))))))((((.....)))))))))...)))))))))) ( -48.00)
>DroSim_CAF1 68809 101 + 1
GGG-ACGAGGGGGAGGCG---------GGGCCACAGGAUGUAGCGGCAAUCCUGGCAUUGUUGAACCAGCAAUAGUGGCCUUCUUUCCAACAAUCGCCCAACCUUUGUCCC
(((-(((((((...((((---------((((((((((((((....)).)))))...(((((((...))))))).))))))).............))))...)))))))))) ( -45.41)
>DroEre_CAF1 68540 107 + 1
GAG--CGGCGGGGAGGCGG--GGAGGCGUUCCACAGGAUGUAGCGGCAAUCCUGGCAUUGUUGAACCAGCAAUAGUGGCCUUCUCUGCAACAGCCGCCCAACCUUUGUCCC
(.(--((((..(...((((--((((((......((((((((....)).)))))).((((((((......)))))))))))))).))))..).))))).)............ ( -44.00)
>DroYak_CAF1 76783 109 + 1
GAG--AGGAAGAGGGGCGGGAGGAGGGGGGCCACAGGAUGUAGCGGCAAUCCUGGCAUUGUUGAACCAGCAAUAGUGGCCUUCUCUGCAACAGUCGCCCAACCUUUGUCCC
..(--(.((((..((((((..(.((((((((((((((((((....)).)))))...(((((((...))))))).))))))))).)).).....))))))...)))).)).. ( -44.00)
>consensus
GGG__CGAGGGGGAGGCG_________GGGCCACAGGAUGUAGCGGCAAUCCUGGCAUUGUUGAACCAGCAAUAGUGGCCUUCUUUCCAACAAUCGCCCAACCUUUGUCCC
......(..((((((((................((((((((....)).)))))).((((((((......))))))))))))))))..)....................... (-26.00 = -26.32 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:44 2006