| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,357,970 – 14,358,060 |
| Length | 90 |
| Max. P | 0.551282 |
| Location | 14,357,970 – 14,358,060 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | reverse |
| Mean pairwise identity | 84.60 |
| Mean single sequence MFE | -18.91 |
| Consensus MFE | -12.34 |
| Energy contribution | -12.15 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.551282 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14357970 90 - 22224390 -----GAAUCAACGGGAAGCGAACAAUGAAAU-AAGUAAAAAGCCGGAAACGGGCGAAACGGAAGUGUUAAUCUGUGAGUGUGAGUGUGAGUGUGA -----...(((.......((..((........-..........(((....)))((...(((((........)))))..))))..)).......))) ( -16.14) >DroSec_CAF1 72442 78 - 1 -----GAAUCAACGGGAAGCGAACAAUGAAAU-AAGUAAAAAGCCGGAAACGGGCGAAACAGAAGUGUUAAUCUGUGAGUG------------UGA -----...........................-..........(((....)))(((..(((((........)))))...))------------).. ( -13.50) >DroEre_CAF1 66527 88 - 1 -----GAAUCGAGGGGAAGCGAACAAUGAAAU-AAGUAUAAAGCCGGAAACCGGCGAAACGGAAGUGUUAAUCUGUGAGUGUG--UGUCGUUGUGC -----...(((........)))(((((((.((-(..((((..(((((...)))))...((....)).......))))..))).--..))))))).. ( -22.30) >DroYak_CAF1 74558 94 - 1 ACACCGAGUCAACGGGAAGCGAACAAUGAAAUGAAGUAAAAAGCCGGAAACGGGCGAAACGGAAGUGUUAAUCUGUGAGUGUG--UGUCAUUGCGC ...(((......)))...(((..((((((..............(((....)))(((..(((((........)))))...))).--..))))))))) ( -23.70) >consensus _____GAAUCAACGGGAAGCGAACAAUGAAAU_AAGUAAAAAGCCGGAAACGGGCGAAACGGAAGUGUUAAUCUGUGAGUGUG__UGUCAUUGUGA ........(((..((..(((......................((((....).)))...((....)))))..))..))).................. (-12.34 = -12.15 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:43 2006