Locus 5550

Sequence ID X_DroMel_CAF1
Location 14,356,322 – 14,356,419
Length 97
Max. P 0.908331
window9008 window9009

overview

Window 8

Location 14,356,322 – 14,356,419
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 96.56
Mean single sequence MFE -33.60
Consensus MFE -33.43
Energy contribution -33.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 1.00
SVM decision value 1.00
SVM RNA-class probability 0.897070
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14356322 97 + 22224390
UUUUGUGUUAAACUGUCAAUGAGCACUGUCUGUUUGCCCACAGGCAGCCUUCGCGAAAUGGCACACUCGCGAGGAUCCUGAGAUCCUGGGACAGUGC
...........((((((........((((((((......))))))))((.((((((..........))))))(((((....))))).)))))))).. ( -33.70)
>DroSec_CAF1 70809 97 + 1
UUUUGUAUUAAACUGUCAAUGAGCUCUGUCUGUUUGCCCACAGGCAGCCUUCGCGAAAUGGCACACUCGCGAGGAUCCUGAGAUCCUGGGACAGUAC
...........((((((........((((((((......))))))))((.((((((..........))))))(((((....))))).)))))))).. ( -33.30)
>DroYak_CAF1 72959 97 + 1
UUUUGUAUUAAACUGUCAAUGAGCUCUGUCUGUUUGCCCACAGGCAGCCUUCGCGAAAUGGCGCACUCGCGAGGAUCCCGAGAUCCUGGGACAGUGC
...........((((((...(((..((((((((......)))))))).....(((......))).))).(.((((((....)))))).))))))).. ( -33.80)
>consensus
UUUUGUAUUAAACUGUCAAUGAGCUCUGUCUGUUUGCCCACAGGCAGCCUUCGCGAAAUGGCACACUCGCGAGGAUCCUGAGAUCCUGGGACAGUGC
...........((((((........((((((((......))))))))((.((((((..........))))))(((((....))))).)))))))).. (-33.43 = -33.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 9

Location 14,356,322 – 14,356,419
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 96.56
Mean single sequence MFE -33.87
Consensus MFE -32.09
Energy contribution -31.87
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.21
Structure conservation index 0.95
SVM decision value 1.06
SVM RNA-class probability 0.908331
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14356322 97 - 22224390
GCACUGUCCCAGGAUCUCAGGAUCCUCGCGAGUGUGCCAUUUCGCGAAGGCUGCCUGUGGGCAAACAGACAGUGCUCAUUGACAGUUUAACACAAAA
((((((((((.(((((....)))))(((((((........))))))).)).((((....))))....))))))))...................... ( -37.10)
>DroSec_CAF1 70809 97 - 1
GUACUGUCCCAGGAUCUCAGGAUCCUCGCGAGUGUGCCAUUUCGCGAAGGCUGCCUGUGGGCAAACAGACAGAGCUCAUUGACAGUUUAAUACAAAA
..((((((((.(((((....)))))(((((((........))))))).))(((.((((......)))).)))........))))))........... ( -32.10)
>DroYak_CAF1 72959 97 - 1
GCACUGUCCCAGGAUCUCGGGAUCCUCGCGAGUGCGCCAUUUCGCGAAGGCUGCCUGUGGGCAAACAGACAGAGCUCAUUGACAGUUUAAUACAAAA
((.(((((((.(((((....)))))(((((((........))))))).)).((((....))))....))))).))...................... ( -32.40)
>consensus
GCACUGUCCCAGGAUCUCAGGAUCCUCGCGAGUGUGCCAUUUCGCGAAGGCUGCCUGUGGGCAAACAGACAGAGCUCAUUGACAGUUUAAUACAAAA
((.(((((((.(((((....)))))(((((((........))))))).)).((((....))))....))))).))...................... (-32.09 = -31.87 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:43 2006