Locus 5548

Sequence ID X_DroMel_CAF1
Location 14,352,460 – 14,352,573
Length 113
Max. P 0.679635
window9005

overview

Window 5

Location 14,352,460 – 14,352,573
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 97.52
Mean single sequence MFE -29.52
Consensus MFE -27.56
Energy contribution -27.76
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.24
Structure conservation index 0.93
SVM decision value 0.30
SVM RNA-class probability 0.679635
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14352460 113 - 22224390
CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCGCUGGGGCUGCUUUUGAAUUAUGG
...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -28.60)
>DroSec_CAF1 65861 113 - 1
CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUUACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCAGCUUUUGAAUUAUGG
...(((.((((((.......(....)..........(((((((.((..(((((((...((.......))...)).)))))..)).)))...)))))))))).)))........ ( -29.00)
>DroSim_CAF1 62214 113 - 1
CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAAUUAUGG
...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -28.60)
>DroEre_CAF1 61566 113 - 1
CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAGUUAUGG
...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -28.60)
>DroYak_CAF1 69194 113 - 1
CAACGACAGCUGCACAGAAGGGAAACCGAUAAGAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAAUUAUGG
...(((.((((((((....((....))...........(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ ( -32.80)
>consensus
CAACGACAGCUGCACAAAAAGGAAACCGAUAAAAAGUCCAGCAAGGAUCUGACCCACAAGAUAUUAACUGAAGGUGUAAGCCCCAUGCCCCUGGGGCUGCUUUUGAAUUAUGG
...(((.((((((((.....(....)............(((.....((((........)))).....)))...)))))(((((((......)))))))))).)))........ (-27.56 = -27.76 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:39 2006