| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,348,333 – 14,348,435 |
| Length | 102 |
| Max. P | 0.662663 |
| Location | 14,348,333 – 14,348,435 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 85.19 |
| Mean single sequence MFE | -31.80 |
| Consensus MFE | -26.37 |
| Energy contribution | -26.90 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662663 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14348333 102 - 22224390 GGAUUUUCUCUGGUUUUUUGCCGAGAUUGCAUGCAGUUAGCGUCUCCAAAUUCUAGGUGACUGCAAUUGCUUGGGUCAGGUCACGCCAAGGCAAAUUGCCGA ..........((((..((((((..((((.((.((((((.(((((.((........)).))).)))))))).)))))).((.....))..))))))..)))). ( -34.20) >DroPse_CAF1 67867 80 - 1 ---UUUUUUAUGGUUUUUUUUUUUGGUUGCAUGCAGCAGGCG-------------------UGCAAUUGCUUGGGUCAGGUCAUGCCAAGGCAAAUUGCUGA ---........(((..(((.....((((((((((.....)))-------------------)))))))((((.((.((.....)))).)))))))..))).. ( -21.30) >DroSec_CAF1 61797 100 - 1 -GAUUUACUCUGGUU-UUUGCCGAGAUUGCAUGCAGUUAGCGUCUCCAAAUUCUGGGUGACUGCAAUUGCUUGGGUCAGGUCACGCCAAGGCAAAUUGCCGA -.........((((.-((((((..((((.((.((((((.(((((((((.....)))).))).)))))))).)))))).((.....))..))))))..)))). ( -32.90) >DroSim_CAF1 58144 100 - 1 -GAUUUCCUCUGGUU-UUUGCCGAGAUUGCAUGCAGUUAGCGUCUCCAAAUUCUGGGUGACUGCAAUUGCUUGGGUCAGGUCACGCCAAGGCAAAUUGCCGA -.........((((.-((((((..((((.((.((((((.(((((((((.....)))).))).)))))))).)))))).((.....))..))))))..)))). ( -32.90) >DroEre_CAF1 57540 101 - 1 -GAAUUUCUCCGGUUUUUUGCCGAGAUUGCAUGCAGUUAGCGUCUCCGAAUUCUGGGUGACUGCAAUUGCUUGGGUCAGGUCACGCCAAGGCAAAUUGCCGA -.........((((..((((((..((((.((.((((((.(((((.((........)).))).)))))))).)))))).((.....))..))))))..)))). ( -36.30) >DroYak_CAF1 65299 101 - 1 -GAUUUUGUCGAGUUUUUUGCCGAGAUUGCAUGCAGUUAGCGUCUCCGAAUUCUGGGUGACUGCAAUUGCUUGGGUCAGGUCACGCCAAGGCAAAUUGCCGA -.......(((.((..((((((..((((.((.((((((.(((((.((........)).))).)))))))).)))))).((.....))..))))))..))))) ( -33.20) >consensus _GAUUUUCUCUGGUUUUUUGCCGAGAUUGCAUGCAGUUAGCGUCUCCAAAUUCUGGGUGACUGCAAUUGCUUGGGUCAGGUCACGCCAAGGCAAAUUGCCGA ..........((((..((((((..((((.((.((((((.(((((.((........)).))).)))))))).)))))).((.....))..))))))..)))). (-26.37 = -26.90 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:38 2006