Locus 5546

Sequence ID X_DroMel_CAF1
Location 14,345,276 – 14,345,366
Length 90
Max. P 0.975921
window9003

overview

Window 3

Location 14,345,276 – 14,345,366
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -24.50
Consensus MFE -24.50
Energy contribution -24.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 1.00
SVM decision value 1.76
SVM RNA-class probability 0.975921
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14345276 90 + 22224390
AGUUGCUCAAAAGCUAAGUCAAACAAGGCGGCUAGCGAUUCAUCGGAGCAGCCAACUCAAGUGCAUGGGCAACAACAACAACAGCAACAA
.((((((((...(((..(((......)))((((.((...........))))))......)))...))))))))................. ( -24.50)
>DroSec_CAF1 57219 90 + 1
AGUUGCUCAAAAGCUAAGUCAAACAAGGCGGCUAGCGAUUCAUCGGAGCAGCCAACUCAAGUGCAUGGGCAACAACAACAGCAGCAACAA
.((((((((...(((..(((......)))((((.((...........))))))......)))...))))))))................. ( -24.50)
>DroSim_CAF1 54940 90 + 1
AGUUGCUCAAAAGCUAAGUCAAACAAGGCGGCUAGCGAUUCAUCGGAGCAGCCAACUCAAGUGCAUGGGCAACAACAACAGCAGCAACAA
.((((((((...(((..(((......)))((((.((...........))))))......)))...))))))))................. ( -24.50)
>DroEre_CAF1 55611 90 + 1
AGUUGCUCAAAAGCUAAGUCAAACAAGGCGGCUAGCGAAUCAUCCGAGCAGCCAACUCAAGUGCAUGGGCAACAACUACAGCAGCAACAA
.((((((((...(((..(((......)))((((.((...........))))))......)))...))))))))................. ( -24.50)
>consensus
AGUUGCUCAAAAGCUAAGUCAAACAAGGCGGCUAGCGAUUCAUCGGAGCAGCCAACUCAAGUGCAUGGGCAACAACAACAGCAGCAACAA
.((((((((...(((..(((......)))((((.((...........))))))......)))...))))))))................. (-24.50 = -24.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:37 2006