Locus 5545

Sequence ID X_DroMel_CAF1
Location 14,343,528 – 14,343,623
Length 95
Max. P 0.560070
window9002

overview

Window 2

Location 14,343,528 – 14,343,623
Length 95
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 80.53
Mean single sequence MFE -21.47
Consensus MFE -14.92
Energy contribution -15.08
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.25
Structure conservation index 0.69
SVM decision value 0.05
SVM RNA-class probability 0.560070
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14343528 95 + 22224390
-------------------UCUCGGC--CCGGG--AG-UGGCGUUCUUGUUGCUAUAAUUCGAUUAGAUUUUGUUUCAGAUUACAGAUUCAAUUUAAAUUUCAAUCAUGAAUUGUAGCA
-------------------.....((--((...--.)-.)))........(((((((((((((((((((((((..((........))..))....)))))).))))..))))))))))) ( -22.00)
>DroGri_CAF1 71423 111 + 1
UCUACCUCUCCCCUUUAGCUGGCUGCUGCCGGC--AC-UGG-----UUGUUGCUAUAAUUCGAUUAGAUUUUGUUUCAGAUUACAGAUUCAAUUUAAAUUUCAAUCAUGAAUUGUAGCA
...........((....((((((....))))))--..-.))-----....(((((((((((((((((((((((..((........))..))....)))))).))))..))))))))))) ( -28.20)
>DroEre_CAF1 53980 95 + 1
-------------------UCUCGGC--CCGGG--AG-UGGCGUUCUUGUUGCUAUAAUUCGAUUAGAUUUUGUUUCAGAUUACAGAUUCAAUUUAAAUUUCAAUCAUGAAUUGUAGCA
-------------------.....((--((...--.)-.)))........(((((((((((((((((((((((..((........))..))....)))))).))))..))))))))))) ( -22.00)
>DroWil_CAF1 58278 111 + 1
UUAG-UC-UACACUC----UUCCUAC--UGUGAAAAGUUGUUGUUGCUUUUGGUAUAAUUCGAUUAGAUUUUGUUUCAGAUUACAGAUUCAAUUUAAAUUUCAAUCAUGAAUUGUAGCA
....-..-..(((..----.......--.)))((((((.......))))))(.((((((((((((((((((((..((........))..))....)))))).))))..)))))))).). ( -15.60)
>DroYak_CAF1 57953 95 + 1
-------------------UCUCGGC--CCGGC--AG-UGGCGUUCUUGUUGCUAUAAUUCGAUUAGAUUUUGUUUCAGAUUACAGAUUCAAUUUAAAUUUCAAUCAUGAAUUGUAGCA
-------------------.....((--((...--.)-.)))........(((((((((((((((((((((((..((........))..))....)))))).))))..))))))))))) ( -20.50)
>DroAna_CAF1 122789 100 + 1
-----UCUAG---------UCCCUGC--CUGCG--AG-UGGCGUUGUUAUUGCUAUAAUUCGAUUAGAUUUUGUUUCAGAUUACAGAUUCAAUUUAAAUUUCAAUCAUGAAUUGUAGCA
-----.....---------.....((--(....--..-.)))........(((((((((((((((((((((((..((........))..))....)))))).))))..))))))))))) ( -20.50)
>consensus
___________________UCUCGGC__CCGGG__AG_UGGCGUUCUUGUUGCUAUAAUUCGAUUAGAUUUUGUUUCAGAUUACAGAUUCAAUUUAAAUUUCAAUCAUGAAUUGUAGCA
..................................................(((((((((((((((((((((((..((........))..))....)))))).))))..))))))))))) (-14.92 = -15.08 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:36 2006