Locus 5544

Sequence ID X_DroMel_CAF1
Location 14,343,291 – 14,343,393
Length 102
Max. P 0.704908
window9001

overview

Window 1

Location 14,343,291 – 14,343,393
Length 102
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 79.61
Mean single sequence MFE -30.53
Consensus MFE -12.87
Energy contribution -15.23
Covariance contribution 2.36
Combinations/Pair 1.19
Mean z-score -2.63
Structure conservation index 0.42
SVM decision value 0.36
SVM RNA-class probability 0.704908
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14343291 102 + 22224390
CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGUA-------------UGGGUUUGUUUUUGUCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG
........((((((((...(((((((((....))).)-------------))))).))))))))..((((...((((((..((((.(((.....))).))))))))))...)))) ( -32.40)
>DroSec_CAF1 55296 102 + 1
CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGCA-------------UGGGUUUGUUUUUGCCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG
...........(((((...((((((.(((....))))-------------))))).......)))))(((...((((((..((((.(((.....))).))))))))))...))). ( -34.50)
>DroEre_CAF1 53739 101 + 1
CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGUA-------------UGGGUUUGUUUUUGC-CGGCUCCAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG
........((((((((...(((((((((....))).)-------------))))).)))))))).-((((...((((((..((((.(((.....))).))))))))))...)))) ( -31.50)
>DroYak_CAF1 57710 110 + 1
CAAUUUAUCAAGGGCAUCCGUCUGUCGCACAUGUGUAUG-----GAUGUAUGGGUUUGUUUUUGCCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG
.............((((((((....(((....))).)))-----)))))..((((........))))(((...((((((..((((.(((.....))).))))))))))...))). ( -34.60)
>DroAna_CAF1 122617 88 + 1
CAAUUUAUCAAGGGCAUCCGACUGUCGCACAUGUGUC-------------GGUGUUGGAGUUUGCCCUUCUCCA--------------CCGAUUGCAUUGAUUUAACUUUUUCUG
......(((((.((((......))))(((.....(((-------------((((..((((......))))..))--------------)))))))).)))))............. ( -21.70)
>DroPer_CAF1 62566 112 + 1
CCAUUCA--CAGGGCAUCCACUUGGCGCACAUGUCUCGGAAGUCAAUGU-UGGGUAUUGGUUUACCCUGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGAUUUAACUUUUGCUG
.......--(((((((..((.((((.((((((....(....)...))))-.(((((......))))).)).)))).))..))))..(((.....)))...............))) ( -28.50)
>consensus
CAAUUUAUCAAGGGCAUCCGCCUGUCGCACAUGUGUA_____________UGGGUUUGUUUUUGCCCGGCUCUAGUUGAUUGCCAUUGCUUUUUGCAUUGGUUUAACUUUUGCUG
............((((...(((....(((....)))...............((((........)))))))...((((((..((((.(((.....))).))))))))))..)))). (-12.87 = -15.23 +   2.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:35 2006