| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,341,670 – 14,341,764 |
| Length | 94 |
| Max. P | 0.830503 |
| Location | 14,341,670 – 14,341,764 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 74.47 |
| Mean single sequence MFE | -29.76 |
| Consensus MFE | -9.90 |
| Energy contribution | -11.82 |
| Covariance contribution | 1.92 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.33 |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.830503 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14341670 94 + 22224390 UAAAUCACAUUU-GGCCAGCC--CAGCCGACACAGGCGAAGAUCUCCGGGGUGAGGUGCUGCAGUGCCACAAGGAAAACAAUUGGCCGGCGAGGUGA .......(((((-.(((.(((--..(((......))).......(((....((.((..(....)..)).)).)))........))).))).))))). ( -32.10) >DroSec_CAF1 53682 94 + 1 UAAAUCACAUUU-GGCCAGCC--CAGCCGACACAGGCAAAGAUCUCCGGGAUGGGGUGCUGCAGAGCCACAAGGAAAACAAUUGGCUGGCGAGGUGA .......(((((-.(((((((--..(((......))).......(((....((.(((........))).)).)))........))))))).))))). ( -32.30) >DroSim_CAF1 51426 94 + 1 UAAAUCACAUUU-GGCCAGCC--CAGCCGACACAGGCAAAGAUCUCCGGGGUGGGAUCCUGCAGAGCCACAAGGAAAACAAUUGGCUGGCGAGGUGA .......(((((-.(((((((--..(((......))).......(((...((((..((.....)).))))..)))........))))))).))))). ( -36.20) >DroYak_CAF1 56216 90 + 1 UAAAUCACAUUU-GGCCAGCC--AA----AAACAGGGAAAGAUCCUGGAUGUGGGUUGCUGGUGAGCUGCAAGGAAAACAAUUGGCUGACGAGGUGA ....((((.(((-(..(((((--((----...(((((.....)))))..((..(.(((....))).)..))..........))))))).)))))))) ( -27.40) >DroAna_CAF1 121624 87 + 1 UAAAUCACAUUUUCGGCAGUCGGCAGUCGACAUA--CACAGAUCCUGUG--------GCAAAGGAUAUGCUGGGAAAACAAUUGUCCUGCCUAUCGA ..............(((.((((.....))))...--(((((...)))))--------....((((((...((......))..)))))))))...... ( -20.80) >consensus UAAAUCACAUUU_GGCCAGCC__CAGCCGACACAGGCAAAGAUCUCCGGGGUGGGGUGCUGCAGAGCCACAAGGAAAACAAUUGGCUGGCGAGGUGA ....((((.....((((((......(((......)))....(((((......)))))........................))))))......)))) ( -9.90 = -11.82 + 1.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:34 2006