Locus 5538

Sequence ID X_DroMel_CAF1
Location 14,328,705 – 14,328,803
Length 98
Max. P 0.552786
window8991

overview

Window 1

Location 14,328,705 – 14,328,803
Length 98
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 82.82
Mean single sequence MFE -26.42
Consensus MFE -17.86
Energy contribution -18.37
Covariance contribution 0.50
Combinations/Pair 1.12
Mean z-score -1.71
Structure conservation index 0.68
SVM decision value 0.04
SVM RNA-class probability 0.552786
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14328705 98 + 22224390
CAACAUCUGCAGCAGGUGAUGACAUCACUUGUGUAAUUUU----------------UUGUGUG-UGUUUGGAGAGACAUGACAAGCGGAUUUGCAUCAAAAAACGUGCAACAAAU
....((((((.(((((((((...)))))))))........----------------((((.((-(((((....)))))))))))))))))((((((........))))))..... ( -27.20)
>DroSim_CAF1 38444 98 + 1
CAACAUCUGCAGCAGGUGAUGACAUCACUUGUGUAAUUUU----------------UUGUGUG-UGUUUGGAGAGACAUGACAAGCGGAUUUGCAUCAAAAAACGUGCAACAAAU
....((((((.(((((((((...)))))))))........----------------((((.((-(((((....)))))))))))))))))((((((........))))))..... ( -27.20)
>DroEre_CAF1 40188 98 + 1
CAACAUCUGCAGCAGGUGAUGACAUCACUUGUGUAAUUUU----------------UUGUGUG-UGUUUGGACAGACAUGACAAGCGGAUUUGCAUCAAAAAACGUGCAACAAAU
....((((((.(((((((((...)))))))))........----------------(..(((.-(((....))).)))..)...))))))((((((........))))))..... ( -28.20)
>DroYak_CAF1 43298 98 + 1
CAACAUCUGCAGCAGGUGAUGACAUCACUUGUGUAAUUUU----------------UUGUGUG-UGUUUGGACAGACAUGACAAGCGGAUUUGCAUCAAAAAACGUGCAACAAAU
....((((((.(((((((((...)))))))))........----------------(..(((.-(((....))).)))..)...))))))((((((........))))))..... ( -28.20)
>DroAna_CAF1 106225 94 + 1
AUACGUGUGGAGCAGGUGAUGACACUACUUGUGUAAUUUU----------------UCGACUGCUGUUUGG----ACAUGACAAGCGGAUUUGCAUCAG-AAACGUGCAACAAAU
.(((((.((..((((((....((((.....))))......----------------.......(((((((.----......)))))))))))))..)).-..)))))........ ( -22.60)
>DroPer_CAF1 46155 104 + 1
----AUCUGAAGCAGGUGAUGACAUCACUUGGGUAUCUCUAAUGUGUGUGCGUGUG-----UG-UGUGUCCUUCCACAUGACAAGCGGAUUUGCAUCAA-AAACGUGCAACAAAU
----........((((((((...))))))))...........(((.((..(((...-----((-.((((...(((.(.......).)))...)))))).-..)))..)))))... ( -25.10)
>consensus
CAACAUCUGCAGCAGGUGAUGACAUCACUUGUGUAAUUUU________________UUGUGUG_UGUUUGGACAGACAUGACAAGCGGAUUUGCAUCAAAAAACGUGCAACAAAU
....((((((.(((((((((...)))))))))................................((((......))))......))))))((((((........))))))..... (-17.86 = -18.37 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:27 2006