Locus 5537

Sequence ID X_DroMel_CAF1
Location 14,327,319 – 14,327,432
Length 113
Max. P 0.620712
window8990

overview

Window 0

Location 14,327,319 – 14,327,432
Length 113
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 87.57
Mean single sequence MFE -24.10
Consensus MFE -19.80
Energy contribution -19.93
Covariance contribution 0.13
Combinations/Pair 1.08
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value 0.18
SVM RNA-class probability 0.620712
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14327319 113 + 22224390
UUAAUUCUCUAAAAACUUUGUAAUUUUCAUACAAAUUAAU---UCGAAAUUUUAGAACUAUAUUACUAAUCGCCAUUCACACGUUCAAUUAUGGAAGUGUGCGGCGGAAGUUACGA
.................(((((((((((...........(---((.........)))..............(((...(((((.((((....)))).))))).)))))))))))))) ( -22.40)
>DroSec_CAF1 39769 112 + 1
UUAAUUCUCUAAA-AUGUUGUAAUUUUUGUACAAAUGAAU---UCGAAAUUUCAGCACUAGUUUACUAAUCGCCAUUCACACGUUCAAUUAUGGAAGUGUGCGGCGGAAGUUACGA
.............-...(((((.......)))))......---(((.((((((.....(((....)))..((((...(((((.((((....)))).))))).)))))))))).))) ( -23.10)
>DroSim_CAF1 37106 112 + 1
UUAAUUCCCUAAA-AUGUUGUAAUUUUGGUACAAAUGAAU---UCGAAAAUUCAGCACUAGUUUACUAAUCGCCAUUCACACGUUCAAUUAUGGAAGUGUGCGGCGGAAGUUACGA
.............-...(((((((((((((.....(((((---(....))))))..)))...........((((...(((((.((((....)))).))))).)))))))))))))) ( -24.60)
>DroYak_CAF1 42071 114 + 1
UUAAUUCUCCAAG-AAUACGUGAUUUUCGUACAUAUAAA-AAAUUCAAAUUUCAGCACUAGUUUACUAAGCGCCAUUCACAAGUUCAAUUAUGGAAGUGUGCGGCGGAAGUUACGA
...((((.....)-))).((((((((((...........-..............((..(((....))).))(((...((((..((((....))))..)))).))))))))))))). ( -26.30)
>consensus
UUAAUUCUCUAAA_AUGUUGUAAUUUUCGUACAAAUGAAU___UCGAAAUUUCAGCACUAGUUUACUAAUCGCCAUUCACACGUUCAAUUAUGGAAGUGUGCGGCGGAAGUUACGA
..................(((((((((...............................(((....)))..((((...(((((.((((....)))).))))).))))))))))))). (-19.80 = -19.93 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:26 2006