Locus 5534

Sequence ID X_DroMel_CAF1
Location 14,319,382 – 14,319,478
Length 96
Max. P 0.710952
window8986

overview

Window 6

Location 14,319,382 – 14,319,478
Length 96
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -22.57
Consensus MFE -13.63
Energy contribution -13.43
Covariance contribution -0.20
Combinations/Pair 1.10
Mean z-score -1.84
Structure conservation index 0.60
SVM decision value 0.38
SVM RNA-class probability 0.710952
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14319382 96 - 22224390
ACGCCACAUGAGCACGGAAUUGGGAGUGGUUUCUACU--------ACCAUUUCCACAUCGAAAUCCACGCCCACUCCCA------CAACCACUUCGAC---U--UACCCAAUCGU
..(((....).))..((...(((((((((........--------...(((((......)))))......)))))))))------...))........---.--........... ( -19.03)
>DroSec_CAF1 32055 96 - 1
ACGCCACAUGAGCACGGAAUUGGGAGUGGUUUCUACC--------UCCAUUUCCACAUCGAAAUCCACGCCCACUUCCA------CAACCACUUCGAC---U--UACCCAAUCGU
..(((....).))..((((.((((.((((((((....--------..............)))).)))).)))).)))).------.............---.--........... ( -21.27)
>DroSim_CAF1 29260 96 - 1
ACGCCACAUGAGCACGGAAUUGGGAGUGGUUUCUACC--------UCCAUUUCCACAUCGAAAUCCACGCCCACUGCCA------CAACCACUUCGAC---U--UACCCAAUCGU
..(((....).))..((...((((.((((((((....--------..............)))).)))).))))...)).------.............---.--........... ( -18.07)
>DroEre_CAF1 28518 93 - 1
ACGCCACAUGAGCACGGAAUUGGGAGUGGUUUCUGCUUCCACA--UCCAUUUCCACAUCGAA---C------AUUUCCA------CAACCACUUCGGC---U--CACCCAGUCGU
((((....(((((..((((.(((..((((.........)))).--.))).))))....((((---.------.......------.......))))))---)--))....).))) ( -24.16)
>DroYak_CAF1 33466 109 - 1
ACGCCACAUGAGCACGGAAUUGGGAGUGGUUGCUACUACCAUUUUUCCAUUUCCACAUCGAAUUCC------AUUUGGCUGGUGGGCUCCACUUCUGCGACUUCGACCCAAUCGU
..(((.(((.(((..((((.((((((((((.......)))))..))))).))))....(((((...------)))))))).)))))).........((((...........)))) ( -30.30)
>consensus
ACGCCACAUGAGCACGGAAUUGGGAGUGGUUUCUACU________UCCAUUUCCACAUCGAAAUCCACGCCCACUUCCA______CAACCACUUCGAC___U__UACCCAAUCGU
..(((....).))(((..((((((.((((.......................)))).(((((..............................))))).........))))))))) (-13.63 = -13.43 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:22 2006