Locus 5533

Sequence ID X_DroMel_CAF1
Location 14,316,763 – 14,316,880
Length 117
Max. P 0.804857
window8985

overview

Window 5

Location 14,316,763 – 14,316,880
Length 117
Sequences 5
Columns 117
Reading direction forward
Mean pairwise identity 91.71
Mean single sequence MFE -27.38
Consensus MFE -21.14
Energy contribution -20.50
Covariance contribution -0.64
Combinations/Pair 1.22
Mean z-score -1.87
Structure conservation index 0.77
SVM decision value 0.63
SVM RNA-class probability 0.804857
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14316763 117 + 22224390
UUCAUCGCAAUUUGCCAUAAACCAUGGUAAAACUAUUUUAUAGUAAACGGUCAUUCCAGUUGAUUGCAUUGUAAAAACGAGCUGUCAAGUUUGGCAUUAACCAAACUUAUCGACCGU
..........((((((((.....))))))))(((((...)))))..((((((.........(((.((.((((....)))))).)))((((((((......))))))))...)))))) ( -32.30)
>DroSec_CAF1 29415 117 + 1
AUCAUCGCAAUUUGCCAUAAACCAGGGUAAAACUAUUUUAUAGUAAAGGGGCAUUACAGUUGAUUGCAUUGUAAAAACGAGCUGUCAAGUUUGGCAUUAACCAAACUUAUCGACCGU
......((..(((((.(((((..((.......))..))))).)))))...))...((.((((((.((.((((....))))))....((((((((......)))))))))))))).)) ( -25.50)
>DroSim_CAF1 26676 117 + 1
UUCAUCGCAAUUUGCCAUAAACCAUGGUAAAACUAUUUUAUAGUAAAGGGGCAUUACAGUUGAUUGCAUUGUAAAAACGAGCUGUCAAGUUUGGCAUUAACCAAACUUAUCGACCGU
......((..((((((((.....))))))))(((((...)))))......))...((.((((((.((.((((....))))))....((((((((......)))))))))))))).)) ( -27.00)
>DroEre_CAF1 25971 116 + 1
UUCAUCGCAAUUUGCCAUAAAGCAUAGUAAAACUAUUUUAUAGUGGAGAGCCAUUUCAGUUGAUUGCUUUGU-AAGACUAGCUGUCGAGUUUGGCAUUAACCAAACUUAUUGGCCGU
.............(((((((((((......((((.......(((((....)))))..))))...))))))))-..(((.....)))((((((((......))))))))...)))... ( -27.60)
>DroYak_CAF1 30762 117 + 1
UUCAACGCAAUUUGCCAUAAACCAUAGUAAAACUAUUUUAUAGUAAGAGGGCAUUUCAGUUGAUUGCAUUGUUAAAACGAGCUGUCAGGUUUGGCAUUAACCAAACUUAUUGACCGU
......((..(((((.(((((..((((.....))))))))).)))))...))...(((((.(((.((.((((....)))))).)))((((((((......))))))))))))).... ( -24.50)
>consensus
UUCAUCGCAAUUUGCCAUAAACCAUGGUAAAACUAUUUUAUAGUAAAGGGGCAUUACAGUUGAUUGCAUUGUAAAAACGAGCUGUCAAGUUUGGCAUUAACCAAACUUAUCGACCGU
......((..(((((.(((((..((((.....))))))))).)))))...))......((((((.((.((((....))))))....((((((((......))))))))))))))... (-21.14 = -20.50 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:21 2006