Locus 5528

Sequence ID X_DroMel_CAF1
Location 14,305,471 – 14,305,561
Length 90
Max. P 0.596342
window8969

overview

Window 9

Location 14,305,471 – 14,305,561
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 71.54
Mean single sequence MFE -21.86
Consensus MFE -11.21
Energy contribution -10.67
Covariance contribution -0.55
Combinations/Pair 1.31
Mean z-score -1.88
Structure conservation index 0.51
SVM decision value 0.13
SVM RNA-class probability 0.596342
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14305471 90 + 22224390
CAGCGGCACCCAGCUUCACCCAACCACCCAACCACACCCACUGAGCGGAGCUCGGCCCCAGAAGCCGAGCACGUCUUUCAUGCCCUUUUC
.((.((((.((.((((..........................)))))).(((((((.......)))))))..........)))))).... ( -22.57)
>DroSec_CAF1 18147 72 + 1
--------CCCAGCUCCACCCAACCAC----------CCACUGGGAGGAGUUCAGCCCCAGAAGCCGGGCACGUCUUUCAUGCCUUUUUC
--------...((((((.((((.....----------....)))).))))))..((((........)))).................... ( -20.40)
>DroEre_CAF1 15426 71 + 1
-----------------GCCCAACCACCCAACC--ACCCAAUGGGUGGAGCUCGGCCCCAGAAGUCGGGCACGUCUUUCAUGCCUUUUUC
-----------------((....(((((((...--......))))))).(((((((.......)))))))...........))....... ( -22.60)
>consensus
________CCCAGCU_CACCCAACCACCCAACC__ACCCACUGGGAGGAGCUCGGCCCCAGAAGCCGGGCACGUCUUUCAUGCCUUUUUC
.........................................((((.((.(((((((.......)))))))...)).)))).......... (-11.21 = -10.67 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:07 2006