| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,302,810 – 14,302,919 |
| Length | 109 |
| Max. P | 0.592299 |
| Location | 14,302,810 – 14,302,919 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.47 |
| Mean single sequence MFE | -24.33 |
| Consensus MFE | -15.76 |
| Energy contribution | -15.15 |
| Covariance contribution | -0.61 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14302810 109 - 22224390 ---------AA-AACGC-GAAAAAUGUAAUUUCCAGCAACAAUUGGGGGAAAGUGGUAUUUUGAUUAAUCGUCGAUUUGCAUGCGAAUGCGGAAAUCCAACAAAAGUCCAGCCCAGAAAG ---------..-...((-((((.......))))..)).....((((((((...(((....(((((.....)))))(((((((....)))))))...))).......)))..))))).... ( -19.30) >DroPse_CAF1 21536 103 - 1 AAAGCGUGGAA-AACGCUGGAAAAUGUAAUUUGCAGCAACAAUUGAGGGAAAGUGGUAUUUUGAUUAACCGUCGAUUUGCAUGCGAAUGCGGAAAUGCAGCGCG---------------- ...((((....-.))((((.(...((((.((((((((((..(((((.((..(((.(.....).)))..)).))))))))).))))))))))....).)))))).---------------- ( -28.80) >DroEre_CAF1 14204 109 - 1 ---------AA-AACGC-GAAAAAUGUAAUUUGCAGCAACAAUCGGGGGAAAGUGGUAUUUUGAUUAAUCGUCGAUUUGCAUGCGAGUGCGGAAAUGCCGCAAAAGUCCAGCCAAGAAAA ---------..-...((-(((........)))))..........((.(((..(((((((((((((.....)))))(((((((....))))))))))))))).....)))..))....... ( -25.80) >DroYak_CAF1 18336 109 - 1 ---------AA-AACGC-GAAAAAUGUAAUUUGCAGCAACAAUUGGGGGAAAGUGGUAUUUUGAUUAAUCGUCGAUUUGCAUGCGAAUGCGGAAAUCCAACAAAAGUCCCGUCAAGAAAA ---------..-...((-(((........)))))........((((((((...(((....(((((.....)))))(((((((....)))))))...))).......)))).))))..... ( -21.40) >DroAna_CAF1 79626 110 - 1 ---------AAAAACGC-GAAAAAUGUCAUUUCCAGCAACAAUUGAGGGAAAGUGGUAUUUUGAUUAAUUGUCGAUUUGCAUGCAAGUCCGGAAUUUGCACAAAAACAGAGUUAAGAAAA ---------...(((((-(((((((..(((((((..((.....))..)).)))))..)))))(((.....)))...)))).(((((((.....)))))))..........)))....... ( -21.90) >DroPer_CAF1 20592 103 - 1 AAAGCGUGGAA-AACGCUGGAAAAUGUAAUUUGCAGCAACAAUUGAGGGAAAGUGGUAUUUUGAUUAACCGUCGAUUUGCAUGCGAAUGCGGAAAUGCAGCGCG---------------- ...((((....-.))((((.(...((((.((((((((((..(((((.((..(((.(.....).)))..)).))))))))).))))))))))....).)))))).---------------- ( -28.80) >consensus _________AA_AACGC_GAAAAAUGUAAUUUGCAGCAACAAUUGAGGGAAAGUGGUAUUUUGAUUAAUCGUCGAUUUGCAUGCGAAUGCGGAAAUGCAACAAAAGUCCAG_CAAGAAAA ..............(((...........(((((((((((..(((((.((..(((.(.....).)))..)).))))))))).))))))))))............................. (-15.76 = -15.15 + -0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:07 2006