| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,298,588 – 14,298,683 |
| Length | 95 |
| Max. P | 0.634478 |
| Location | 14,298,588 – 14,298,683 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 83.00 |
| Mean single sequence MFE | -28.79 |
| Consensus MFE | -20.42 |
| Energy contribution | -20.45 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.634478 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14298588 95 - 22224390 -GGGCGUG-----GCCU-------AGGCCAUAAAAAGAUUAAGCAGGCGAGCGGCGUGUUAAUUUAUGGCCAACAAAUAUGCUCGACAAAACGUUUAAGCA-------AGCCUCC -((((...-----....-------.(((((((....((((((.((.((.....)).)))))))))))))))........((((.(((.....)))..))))-------.)))).. ( -27.50) >DroPse_CAF1 16899 101 - 1 -GGGCGGAG----GACUAGGCGCAAGGCCAUAAAAAGAUUAAGCAGGCGAGCGGCGUGUUAAUUUAUGGCCAACAAAUAUGCUCGACAAAACGCUUAAACA-------GAGAA-- -(((((...----.....((((...(((((((....((((((.((.((.....)).)))))))))))))))........))))........))))).....-------.....-- ( -23.39) >DroSim_CAF1 12505 95 - 1 -GGGCGAG-----GCCU-------AGGCCAUAAAAAGAUUAAGCAGGCGAGCGGCGUGUUAAUUUAUGGCCAACAAAUAUGCUCGACAAAACGUUUAAGCA-------AGCCUCC -....(((-----((..-------.(((((((....((((((.((.((.....)).)))))))))))))))........((((.(((.....)))..))))-------.))))). ( -30.50) >DroEre_CAF1 10601 95 - 1 -GGGCGUG-----GCCU-------AGGCCAUAAAAAGAUUAAGCAGGCGAGCGGCGUGUUAAUUUAUGGCCAACAAAUAUGCUCGACAAAACGUUUAAGCA-------AGCCUGC -((((...-----....-------.(((((((....((((((.((.((.....)).)))))))))))))))........((((.(((.....)))..))))-------.)))).. ( -28.10) >DroWil_CAF1 13503 110 - 1 GGGGU-UUGUAU-GCCUAG---CCAGGCCAUAAAAAGAUUAAGCAAGCGAGCGGCGUGUUAAUUUAUGGCCAACAAAUAUGCUCGGUAAAACGUUUAAACAGAGACCGAGCAUCC .((((-......-))))..---...(((((((....((((((.((.((.....)).))))))))))))))).......(((((((((.....((....))....))))))))).. ( -33.20) >DroPer_CAF1 15951 105 - 1 -GGGCCUGGUAUCGCCUAGGCGCAAGGCCAUAAAAAGAUUAAGCAGGCGAGCGGCGUGUUAAUUUAUGGCCAACAAAUAUGCUCGACAAAACGCUUAAACA-------GAGAA-- -(.((((((......)))))).)..(((((((....((((((.((.((.....)).)))))))))))))))..........(((.................-------)))..-- ( -30.03) >consensus _GGGCGUG_____GCCU_______AGGCCAUAAAAAGAUUAAGCAGGCGAGCGGCGUGUUAAUUUAUGGCCAACAAAUAUGCUCGACAAAACGUUUAAACA_______AGCAUCC .((((........))))........(((((((....((((((.((.((.....)).)))))))))))))))............................................ (-20.42 = -20.45 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:05 2006