Locus 5520

Sequence ID X_DroMel_CAF1
Location 14,286,721 – 14,286,835
Length 114
Max. P 0.999266
window8957

overview

Window 7

Location 14,286,721 – 14,286,835
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.98
Mean single sequence MFE -32.60
Consensus MFE -28.28
Energy contribution -28.56
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -2.61
Structure conservation index 0.87
SVM decision value 3.47
SVM RNA-class probability 0.999266
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14286721 114 + 22224390
GUGAGCGUGUGUGUACUUUUUGUUUUUUUUUUACUUUUAUUGUU---GUUCGGGCUUAACCGAAAUGAGCUUUGAAAAUGGUUUAUGCGCCAUUUUGUGU---GUGCGCCGCAGCUUAUG
(((((((((.((((((.....................((..(((---.(((((......)))))...)))..))((((((((......))))))))....---))))))))).)))))). ( -32.10)
>DroSec_CAF1 27041 110 + 1
GUGAGCGUGUGUGUACUUUUUGUUU----UUUACUUUUAUUGUU---GCUCGGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGU---GUGCGCCGCAGCUUAUG
(((((((((.((((((.........----...............---..((((......)))).....((...(((((((((......))))))))).))---))))))))).)))))). ( -33.30)
>DroSim_CAF1 30366 113 + 1
GUGAGCGUGUGUGUACUUUUUGUUU----UUUACUUUUAUUGUUCGGGGUCGGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGU---GUGCGCCGCAGCUUAUG
(((((((((.((((((.........----............(((((...((((......))))..)))))...(((((((((......)))))))))...---))))))))).)))))). ( -38.50)
>DroEre_CAF1 28757 110 + 1
GUGUGUGUGUGUGUACUUUUUGUUU----UUUACUCUUAUUGUU---GCUCUGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCGUUUUGUGU---GUGCGCCGCAGCUUAUG
...((((.(((..(((.........----...............---(((((((.....)))....))))...(((((((((......))))))))).))---)..)))))))....... ( -27.20)
>DroYak_CAF1 30622 113 + 1
GUGUGCGUGUGUGUACUUUUUGUUU----UUUACUUUUAUUGUU---GCUGCGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGUUUUGUGCGCCGCAGCUUAUG
(((..(....)..))).........----...............---((((((((...((......((((...(((((((((......))))))))).)))).))..))))))))..... ( -31.90)
>consensus
GUGAGCGUGUGUGUACUUUUUGUUU____UUUACUUUUAUUGUU___GCUCGGGCUUAACCGAAAUGAGCUUUCAAAAUGGUUUAUGCGCCAUUUUGUGU___GUGCGCCGCAGCUUAUG
(((((((((.((((((....................................((((((.......))))))..(((((((((......)))))))))......))))))))).)))))). (-28.28 = -28.56 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:57 2006