Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,284,746 – 14,284,852 |
Length | 106 |
Max. P | 0.685094 |
Location | 14,284,746 – 14,284,852 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 87.33 |
Mean single sequence MFE | -26.88 |
Consensus MFE | -18.94 |
Energy contribution | -19.44 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.15 |
Mean z-score | -1.79 |
Structure conservation index | 0.70 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14284746 106 + 22224390 AA-AAGUGAAUAAAUAAGGACAUGCAA--------GGCGAAUAUGUGUAUAGUAGUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGUGAAAGUUUUCAGACUAAGGU ..-................((((((..--------(((((((((.(((............))).)))))))))...((((.....))))))))))...((((....))))..... ( -24.10) >DroSec_CAF1 25151 106 + 1 AA-AAGGGAAUAAAUAAGGACAUGCAA--------GGGGGAUACGUGCAUAGUACUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGUGAAAGUUUCCAGACUAAGGU ..-..((((((........((((((..--------(((((((((.(((............))).)))))).)))..((((.....))))))))))....)))))).......... ( -26.80) >DroSim_CAF1 28449 106 + 1 AA-AAGGGAAUAAAUAAGGACAUGCAA--------GGGGGAUACGUGCAUAGUACUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGCGAAAGUUUCCAGACUAAGGU ..-..(((((..........(((((..--------(((((((((.(((............))).)))))).)))..((((.....)))))))))(....)))))).......... ( -26.30) >DroEre_CAF1 26954 113 + 1 AAAAAGGGAAUAAAUAAGGCCAUGCAGGCCGUGCAGGGGGAAA--UGUAAAAUACUGAAGGCAAGUGCUCGUUCGCCUGAAUAUUUCAGGCAUGUGAAAGUUUCCAGACCAAGGU .................((((.....)))).....((.(((((--(.....(((..((((((....)))..)))((((((.....)))))).)))....))))))...))..... ( -30.30) >consensus AA_AAGGGAAUAAAUAAGGACAUGCAA________GGGGGAUACGUGCAUAGUACUGAAGGCAAGUGUUCGUCCGACUGAAUAUUUCAGGCAUGUGAAAGUUUCCAGACUAAGGU .....((((((.........(((((..........(((((((((.(((............))).)))))).)))..((((.....))))))))).....)))))).......... (-18.94 = -19.44 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:52 2006