Locus 5516

Sequence ID X_DroMel_CAF1
Location 14,282,513 – 14,282,627
Length 114
Max. P 0.910011
window8951

overview

Window 1

Location 14,282,513 – 14,282,627
Length 114
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.38
Mean single sequence MFE -31.90
Consensus MFE -30.79
Energy contribution -31.10
Covariance contribution 0.31
Combinations/Pair 1.03
Mean z-score -1.72
Structure conservation index 0.97
SVM decision value 1.07
SVM RNA-class probability 0.910011
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14282513 114 - 22224390
------GACCUUCAUUUUACCGUUGACUGUGGGUAAUAAAAUUUGUUGCCGUUGUCGCCAUUGUUCUACGAGGCGCGAUUUUAUGAUACCGUCAACAUAUUUCAACUUGGCAACGAGCAU
------...............((((((.((((((((((.....)))))))((((.((((.(((.....))))))))))).......))).)))))).........((((....))))... ( -32.10)
>DroSec_CAF1 22982 114 - 1
------GACCUUCAUUUUUCCGUUGACUGUGGGUAAUAAAAUUUGUUGCCGUUGUCGCCAUUGUUCUACGAGGCGCGAUUUUAUGAUACCGUCAACAUAUUUCAACUUGGCAACGAGAAU
------...............((((((.((((((((((.....)))))))((((.((((.(((.....))))))))))).......))).)))))).........((((....))))... ( -32.80)
>DroEre_CAF1 24921 117 - 1
--UCCCGACCUUCAUU-UUCCGUCGACUGUGGGCAAUAAAAUUUGUUGCCGUUGUCGCCAUUGUUCUACGAGGCGCGAUUUUAUGAUACCGCCAACAUAUUUCAACUUGGCAACGAGAAU
--...((((.......-....))))..(((((((((((.....)))))))((((.((((.(((.....)))))))))))................))))......((((....))))... ( -28.80)
>DroYak_CAF1 26491 120 - 1
GAUGGCGACCUUCAUUUUUCCGUUGACUGUGGGUAAUAAAAUUUGUUGCCGUUGUCGCCAUUGUUCUACGAGGCGCGAUUUUAUGAUACCGUCAACAUAUUUCAACUUGGCAACGAGUCU
((.((...)).))........((((((.((((((((((.....)))))))((((.((((.(((.....))))))))))).......))).))))))........(((((....))))).. ( -33.90)
>consensus
______GACCUUCAUUUUUCCGUUGACUGUGGGUAAUAAAAUUUGUUGCCGUUGUCGCCAUUGUUCUACGAGGCGCGAUUUUAUGAUACCGUCAACAUAUUUCAACUUGGCAACGAGAAU
.....................((((((.((((((((((.....)))))))((((.((((.(((.....))))))))))).......))).)))))).........((((....))))... (-30.79 = -31.10 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:51 2006