Locus 5514

Sequence ID X_DroMel_CAF1
Location 14,279,290 – 14,279,394
Length 104
Max. P 0.999033
window8948

overview

Window 8

Location 14,279,290 – 14,279,394
Length 104
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 98.47
Mean single sequence MFE -30.06
Consensus MFE -29.46
Energy contribution -29.46
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.24
Structure conservation index 0.98
SVM decision value 3.34
SVM RNA-class probability 0.999033
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14279290 104 - 22224390
--ACUGGGUGGCGGCGGCCUGUGAAAAGCCAUAAAGUGCAAAUGGUGCCCAGGGGAAUCAUCAAACAGCAAAAAGCUGCCAUAAAACGACACAAACAUGUGCGCAA
--.....(((((((((((.(.....).)))......(((...(((((((....))...)))))....)))....))))))))....((.((((....))))))... ( -29.50)
>DroSec_CAF1 19908 104 - 1
--ACUGUGUGGCGGCGGCCUGUGAAAAGCCAUAAAGUGCAAAUGGUGCCCAGGGGAAUCAUCAAACAGCAAAAAGCUGCCAUAAAACGACACAAACAUGUGCGCAA
--....((((((((((((.(.....).)))......(((...(((((((....))...)))))....)))....)))))))))...((.((((....))))))... ( -30.40)
>DroSim_CAF1 23842 104 - 1
--ACUGGGUGGCGGCGGCCUGUGAAAAGCCAUAAAGUGCAAAUGGUGCCCAGGGGAAUCAUCAAACAGCAAAAAGCUGCCAUAAAACGACACAAACAUGUGCGCAA
--.....(((((((((((.(.....).)))......(((...(((((((....))...)))))....)))....))))))))....((.((((....))))))... ( -29.50)
>DroEre_CAF1 21981 104 - 1
--ACUGGGUGGCGGCGGCCUGUGAAAAGCCAUAAAGUGCAAAUGGUGCCCAGGGGAAUCAUCAAACAGCAAAAAGCUGCCAUAAAACGACACAAACAUGUGCGCCA
--...(((((((((((((.(.....).)))......(((...(((((((....))...)))))....)))....))))))))....((.((((....)))))))). ( -31.40)
>DroYak_CAF1 23078 106 - 1
AAACUGGGUGGCGGCGGCCUGUGAAAAGCCAUAAAGUGCAAAUGGUGCCCAGGGGAAUCAUCAAACAGCAAAAAGCUGCCAUAAAACGACACAAACAUGUGCGCAA
.......(((((((((((.(.....).)))......(((...(((((((....))...)))))....)))....))))))))....((.((((....))))))... ( -29.50)
>consensus
__ACUGGGUGGCGGCGGCCUGUGAAAAGCCAUAAAGUGCAAAUGGUGCCCAGGGGAAUCAUCAAACAGCAAAAAGCUGCCAUAAAACGACACAAACAUGUGCGCAA
.......(((((((((((.(.....).)))......(((...(((((((....))...)))))....)))....))))))))....((.((((....))))))... (-29.46 = -29.46 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:48 2006