| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,277,175 – 14,277,295 |
| Length | 120 |
| Max. P | 0.762504 |
| Location | 14,277,175 – 14,277,295 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.94 |
| Mean single sequence MFE | -30.20 |
| Consensus MFE | -25.73 |
| Energy contribution | -26.07 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.762504 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14277175 120 + 22224390 CCAAUCAUCCGAAAUUUUCGAUUCCAAUUCGCAUUUAAACAUGCAGAAGCUGGGCGUUUGUGCAUGUGGCGGUGCAACUUGGUCAGCCGCACACACAUAAAUACGCACAUAUAUGUAUGU .........(((.....)))...(((.(((((((......)))).)))..)))(((((((((..(((((((((((......))..))))).)))))))))..))))(((((....))))) ( -30.50) >DroSec_CAF1 17800 114 + 1 CCAAUCAUUCGAAAUGUUCGAUUCCAAUUCGCAUUUAAACAUGCAGAAGCUGGGCGUUUGUGCAUGUGGCGGUGCAAGUUGGUCAGCCGCACACACAUAAAUACGUAUAUAUA------U ..............(((.((...((((((.(((((...(((((((.((((.....)))).)))))))...))))).)))))).....)).)))....................------. ( -28.80) >DroEre_CAF1 20066 94 + 1 CCAAUCAUGCAAAAUGUUCGAUUCCAGCUCGCAUUUAAACAUGCAGAAGCUGGGCGUUUGUGCAUGUGGCGUUGCAAGUUGGUCAGCGGCACAC-------------------------- ......(((((((((((......(((((((((((......)))).).)))))))))))).)))))(((.((((((......).))))).)))..-------------------------- ( -31.30) >consensus CCAAUCAUCCGAAAUGUUCGAUUCCAAUUCGCAUUUAAACAUGCAGAAGCUGGGCGUUUGUGCAUGUGGCGGUGCAAGUUGGUCAGCCGCACACACAUAAAUACG_A_AUAUA______U ...................((..((((((.(((((...(((((((.((((.....)))).)))))))...))))).)))))))).................................... (-25.73 = -26.07 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:47 2006