| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,275,994 – 14,276,095 |
| Length | 101 |
| Max. P | 0.995860 |
| Location | 14,275,994 – 14,276,095 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 85.85 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -20.98 |
| Energy contribution | -20.53 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.98 |
| SVM decision value | 2.62 |
| SVM RNA-class probability | 0.995860 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14275994 101 - 22224390 ACCC--AUAUCCUUAGGCCCCCUUUACUGCCAACAAUAUAGAGAUAUUCCCUCUGUGUUUUCUCUGUGCAAUUGCAAAUUGCGCAUUUUUGUUGCAUUU--ACCA ....--.....................(((.((((((((((((.......))))))))......((((((((.....))))))))....)))))))...--.... ( -20.40) >DroSec_CAF1 16643 93 - 1 ACCC--AUAUCCUUAGGACCCCUCUACUGCCAACAAUAUAGAGAUAU-CCCUCUGUG-------UGUGCAAUUGCAAAUUGCGCAUUUUUGUUGCAUUU--ACCA ....--...(((...))).........(((.((((((((((((....-..)))))))-------)(((((((.....))))))).....)))))))...--.... ( -21.20) >DroYak_CAF1 19799 105 - 1 CCCCUUAUAUCCUUAAGCCCCCUUCACUGCCAACAAUAUAGGGAUAUUCACCCUGUGUUUUCUCUGUGCAAUUGCAAAUUGCGCAUUUUUGUUGCAUUUGUUGCA ...((((......))))..........(((.((((((((((((.......))))))))......((((((((.....))))))))....)))))))......... ( -22.80) >consensus ACCC__AUAUCCUUAGGCCCCCUUUACUGCCAACAAUAUAGAGAUAUUCCCUCUGUGUUUUCUCUGUGCAAUUGCAAAUUGCGCAUUUUUGUUGCAUUU__ACCA ...........................(((.((((((((((((.......))))))).......((((((((.....))))))))...))))))))......... (-20.98 = -20.53 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:46 2006