| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,274,826 – 14,274,946 |
| Length | 120 |
| Max. P | 0.885632 |
| Location | 14,274,826 – 14,274,946 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.42 |
| Mean single sequence MFE | -48.77 |
| Consensus MFE | -36.56 |
| Energy contribution | -37.24 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.885632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14274826 120 + 22224390 AUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCAGGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGCAGUAGGAUGCCCGUGGAUGCCAAAAAAG ...(((((((((((((((((((((((..(((((...)))))(((((.....))))))))))))))...)))))))))...(((((..............))))))))))........... ( -49.64) >DroSec_CAF1 15460 120 + 1 AUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCGAGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGGAGGAGGAUGCUCGGUGAUGCCAAAAAAG .((..((((.(((..(((((((.((((((((((...)))))...))))).......)))))))..))).))))..))....((((...(..(((.......)))..)..))))....... ( -47.40) >DroSim_CAF1 18970 120 + 1 AUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCGGGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGGAGGAGGAUGCUCGGUGAUGCCAAAAAAG .....(((((((((((((((((((((..(((((...)))))(((((.....))))))))))))))...))))))).)))))((((...(..(((.......)))..)..))))....... ( -48.90) >DroEre_CAF1 17911 120 + 1 AUUUUCGCUUCCUGUCGUUGGCCUGCCAGCGGCCACGCCCCUUUUGGCACACAAAAGUGGGCGGAAGGUGGCGGGAAAGUGGGCGGACGAGGAGCAGCAAGCCCGUGGAUGCCAAAAAAG .((..((((.(((((((((((....))))))))..(((((((((((.....)))))).)))))..))).))))..))....((((..((.((.((.....)))).))..))))....... ( -56.30) >DroYak_CAF1 18704 111 + 1 AUUUUCGCUUCCUGUCGUUCGUUUGCCAGGGGCCACGCCUCUUUUGGCACACAAAAGAGGGCGGAAGGUGGGCGGAAAGGGGGAGG---------AGGAUGCCCGUGGAUGCCAAAAAAG .......((((((.(..((((((..((.....((.(.(((((((((.....)))))))))).))..))..))))))..).))))))---------.((...((...))...))....... ( -41.60) >consensus AUUUUCGCUUCCUGUCGUUCGCCUGCCAGGGGCCACGCCCCUUUUGGCACACAAAAGCGGGCGGAAGGUGGCGGGAAAGUGGGCGGAAAAGGAGGAGGAUGCCCGUGGAUGCCAAAAAAG .((((.((((((((((((((((((((..(((((...)))))(((((.....))))))))))))))...)))))))))...(((((..............)))))......)).))))... (-36.56 = -37.24 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:42 2006