Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,582,042 – 1,582,135 |
Length | 93 |
Max. P | 0.959642 |
Location | 1,582,042 – 1,582,135 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 77.05 |
Mean single sequence MFE | -32.50 |
Consensus MFE | -21.85 |
Energy contribution | -22.72 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.05 |
Mean z-score | -2.08 |
Structure conservation index | 0.67 |
SVM decision value | 1.50 |
SVM RNA-class probability | 0.959642 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1582042 93 + 22224390 -----------CUCCACCUACAUUCUCCAUCCUGGC--CUGCUCCGUGUCAUAACUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA -----------.....................((((--(((((((((((((....)))).)))).)))))...((((......))))))))............... ( -26.90) >DroPse_CAF1 61015 101 + 1 CCUGGGUCGGGCUCCGGCUCCGGCUCUGACGCUGGCUCCGACUCCGGCUCA-----GGCGGCGGAAGCGGAAAGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA (((((((((((...(((..(((((......)))))..)))..)))))))))-----))(.((....)).)...((((......))))................... ( -43.90) >DroSec_CAF1 43563 93 + 1 -----------CUCCACCUCCAUUCUCCAUCCUGGC--CUGCUCCGUGUCAUAACUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA -----------.....................((((--(((((((((((((....)))).)))).)))))...((((......))))))))............... ( -26.90) >DroEre_CAF1 46811 87 + 1 -----------CACCAG------CCUCCGUCCUGGC--CCGCUCCGUGUCAUGGCUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA -----------..((.(------(.(((((((..((--(.((.....))...)))..).)))))).)))).((((((......)))).))................ ( -32.30) >consensus ___________CUCCACCUCCAUCCUCCAUCCUGGC__CUGCUCCGUGUCAUAACUGGCGACGGAAGCGGAAGGCGCUGAAAUGCGCGCUAAAAAUUUCAAAAUAA ................................((((..((((((((((((......))).)))).)))))...((((......))))))))............... (-21.85 = -22.72 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:31 2006