Locus 5507

Sequence ID X_DroMel_CAF1
Location 14,273,578 – 14,273,698
Length 120
Max. P 0.937132
window8936

overview

Window 6

Location 14,273,578 – 14,273,698
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.78
Mean single sequence MFE -37.02
Consensus MFE -36.90
Energy contribution -36.90
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.21
Structure conservation index 1.00
SVM decision value 1.26
SVM RNA-class probability 0.937132
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14273578 120 + 22224390
GCUGAAAGUUUGCGCUGCGUGAAACUUUUUAGUUGGUUUAUAUUGCACCGAGCUUGGGCGAUGGAAACGAGCGCAAAUUAUGAGAUGUCCUUGCUUUUGAAUAUGUAAGGAGCUGUUUCU
......((((((((((.(((.(((((........))))).((((((.(((....)))))))))...)))))))))))))..(((((((((((((..........))))))).).))))). ( -37.00)
>DroSec_CAF1 14253 120 + 1
GCUGAAAGUUUGCGCUGCGUGAAACUUUCUAGUUGGUUUAUAUUGCACCGAGCUUGGGCGAUGGAAACGAGCGCAAAUUAUGAGAUGUCCUUGCUUUUGAAUAUGUAAGGAGCUGUUUCU
......((((((((((.(((.(((((........))))).((((((.(((....)))))))))...)))))))))))))..(((((((((((((..........))))))).).))))). ( -37.00)
>DroEre_CAF1 16664 120 + 1
GCUAAAAGUUUGCGCUGCGUGAAACUUUUUAGUUGGUUUAUAUUGCGCCGAGCUUGGGCGAUGGAAACGAGCGCAAAUUAUGAGAUGUCCUUGCUGUUGAAUAUGUAAGGAGAUGUUUCU
......((((((((((.(((.(((((........))))).((((((.(((....)))))))))...)))))))))))))..((.((.(((((((..........))))))).)).))... ( -37.10)
>DroYak_CAF1 17436 120 + 1
GCUAAAAGUUUGCGCUGCGUGAAACUUUUUAGUUGGUUUAUAUUGCACCGAGCUUGGGCGAUGGAAACGAGCGCAAAUUAUGAGAUGUCCUUGCUUUUGAAUAUGUAAGGAGCUGUUUCU
......((((((((((.(((.(((((........))))).((((((.(((....)))))))))...)))))))))))))..(((((((((((((..........))))))).).))))). ( -37.00)
>consensus
GCUAAAAGUUUGCGCUGCGUGAAACUUUUUAGUUGGUUUAUAUUGCACCGAGCUUGGGCGAUGGAAACGAGCGCAAAUUAUGAGAUGUCCUUGCUUUUGAAUAUGUAAGGAGCUGUUUCU
......((((((((((.(((.(((((........))))).((((((.(((....)))))))))...)))))))))))))..(((((((((((((..........)))))))..)))))). (-36.90 = -36.90 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:38 2006