Locus 5506

Sequence ID X_DroMel_CAF1
Location 14,271,758 – 14,271,876
Length 118
Max. P 0.915560
window8935

overview

Window 5

Location 14,271,758 – 14,271,876
Length 118
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 94.52
Mean single sequence MFE -39.05
Consensus MFE -34.94
Energy contribution -35.70
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.05
Structure conservation index 0.89
SVM decision value 1.10
SVM RNA-class probability 0.915560
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14271758 118 + 22224390
AGAAUGUGAGCUGAAAGUGGGUUUCGGCGGGA--AAAAAAGUGAGCGGCGAAAGCCCUUCGGUUGGGGUAGCCAUGCGUAGGUGUCGUUGUAAGUGCCGGAAGUGGCUUUUUGCACAGUU
....((((....((((((.(.((((((((...--....((.((((.(((....))).)))).))....((((.((((....)))).))))....)))))))).).))))))..))))... ( -38.00)
>DroSec_CAF1 12352 116 + 1
AGAAUGUGAGGUGAAAGUGGGUUUCGGCGG----AAAAAAGUGCGCGGCGAAAGCCCUUCGGAUGGGGUAGCCAUGCGUAGGUGUCGUUGUAAGUGCCGGAAGUGGCUUUUUGCACAGUU
....((((....((((((.(.((((((((.----....((..(((((((....)))((.((.((((.....)))).)).))))))..)).....)))))))).).))))))..))))... ( -42.70)
>DroSim_CAF1 16393 116 + 1
AGAAUGUGAGGUGAAAGUGGGUUUCGGCGG----AAAAAAGUGCGCGGCGAAAACCCUUCGGAUGGGGUAGCCAUGCGUAGGUGUCGUUGUAAGUGCCGGAAGUGGCUUUUUGCACAGUU
....((((....((((((.(.((((((((.----(......).)(((((((....(((.((.((((.....)))).)).)))..)))))))....))))))).).))))))..))))... ( -41.00)
>DroYak_CAF1 15472 120 + 1
AGAAAGCGAGGUGAAAGUGUGUUUCGGCGGGAAAAAAAAAGUGCGCGGCGAAAACCCUUCGGAUGGUGUAGCCAUGCGUAGGUGUCGUUGUAAGUGCCGGAAGUGGCUUUUUGCACAGUU
....(((..(.(((((.....))))).)............(((((((((((....(((.((.((((.....)))).)).)))..)))))))((((..(....)..))))...)))).))) ( -34.50)
>consensus
AGAAUGUGAGGUGAAAGUGGGUUUCGGCGG____AAAAAAGUGCGCGGCGAAAACCCUUCGGAUGGGGUAGCCAUGCGUAGGUGUCGUUGUAAGUGCCGGAAGUGGCUUUUUGCACAGUU
.....(((....((((((.(.((((((((...............(((((((....(((.((.((((.....)))).)).)))..)))))))...)))))))).).))))))..))).... (-34.94 = -35.70 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:37 2006