Locus 5503

Sequence ID X_DroMel_CAF1
Location 14,270,957 – 14,271,064
Length 107
Max. P 0.892958
window8928

overview

Window 8

Location 14,270,957 – 14,271,064
Length 107
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -29.24
Consensus MFE -25.19
Energy contribution -25.87
Covariance contribution 0.68
Combinations/Pair 1.04
Mean z-score -1.55
Structure conservation index 0.86
SVM decision value 0.97
SVM RNA-class probability 0.892958
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14270957 107 - 22224390
CUCUCCAUUUUCCUGUUGUCU--GGGGGCUCUGUUAAAAGUUUUCAUUACUGUUUGUUAGUUGACGACGUCGCUUUUAGUUAGUAAAUGUCUUUCCAAGGCGAUGGAGA---------
.(((((........(((((((--(..((((........))))..))..((((.....)))).))))))((((((((..(..((.......))..).)))))))))))))--------- ( -28.60)
>DroSec_CAF1 11580 97 - 1
CUCUCCAUUUUCCUGUUGUCU--GGGGGCUCUGUUAAAAGUUUUCAUUACUGUUUGUUAGUUGACGACGUCGCUUUUAGUUAGUAAAUG----------GCGAUGGAGA---------
.(((((........(((((((--(..((((........))))..))..((((.....)))).))))))((((((((((.....)))).)----------))))))))))--------- ( -27.50)
>DroSim_CAF1 15594 107 - 1
CUCUCCAUUUUCCUGUUGUCU--GGGGGCUCUGUUAAAAGUUUUCAUUACUGUUUGUUAGUUGACGACGUCGCUUUUAGUUAGUAAAUGUCUUUCCGAGGCGAUGGAGA---------
.(((((........(((((((--(..((((........))))..))..((((.....)))).))))))((((((((..(..((.......))..).)))))))))))))--------- ( -29.00)
>DroEre_CAF1 14008 107 - 1
CCCUCCAUUUUCCUGUUGUCU--GGGGGCUCUGUUAAAAGUUUUCAUUACUGUUUGUUAGUUGACGACGUCGCUUUUAGUUAGUAAAUGUCUUUCCGAGGCGAUGGAGA---------
..((((........(((((((--(..((((........))))..))..((((.....)))).))))))((((((((..(..((.......))..).)))))))))))).--------- ( -28.40)
>DroYak_CAF1 14635 118 - 1
CUCUCCAUUUUCCUGUUGUCUGUGGGGGCUCUGUUAAAAGUUUUCAUUACUGUUUGUUAGUUGACGACGUCGCUUUUAGUUAGUAAAUGUCUUUCCGAGGCGAUGGAGAUGUGGGCGA
.((((((((((((.((((((.(((..((((........))))..))).((((.....)))).))))))((((((((..(..((.......))..).))))))))))))).))))).)) ( -32.70)
>consensus
CUCUCCAUUUUCCUGUUGUCU__GGGGGCUCUGUUAAAAGUUUUCAUUACUGUUUGUUAGUUGACGACGUCGCUUUUAGUUAGUAAAUGUCUUUCCGAGGCGAUGGAGA_________
.(((((........((((((...(..((((........))))..)...((((.....)))).))))))((((((((....................)))))))))))))......... (-25.19 = -25.87 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:31 2006