Locus 5501

Sequence ID X_DroMel_CAF1
Location 14,269,767 – 14,269,858
Length 91
Max. P 0.605177
window8925

overview

Window 5

Location 14,269,767 – 14,269,858
Length 91
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 72.01
Mean single sequence MFE -23.77
Consensus MFE -14.35
Energy contribution -13.85
Covariance contribution -0.50
Combinations/Pair 1.23
Mean z-score -1.52
Structure conservation index 0.60
SVM decision value 0.14
SVM RNA-class probability 0.605177
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14269767 91 - 22224390
AGUUGACAAUCUUAUUGUUGCUGACAGUGC--UGCACUGGUACACUGUGAGAAUCG----GUGGUUUAAAAUCAA-------------AAGAACUUAACA--ACAAAUAACU
.((((.......(((((...((.((((((.--(((....))))))))).))...))----)))((((........-------------..))))....))--))........ ( -19.20)
>DroSec_CAF1 10395 101 - 1
AGUUGACAGUCUUAUUGUUGCUGACAGUGC--UGCACUGGCACACUGUGAGAUUGG----GUGGGCUACAACUAA-UGUUUUAAAAGCAGGAACUCAAAA--ACAAAACA--
(((((..(((((........((.((((((.--(((....))))))))).)).....----..))))).)))))..-((((((...((......))..)))--))).....-- ( -24.96)
>DroSim_CAF1 14416 103 - 1
AGUUGACAGUCUUAUUGUUGCUGACAGUGC--UGCACUGGCACACUGUGAGAAUGG----GUGGGCUACAACUAA-UGUUUUAAAAGCAGGAACUCAAAA--ACAAAAUACU
(((((..(((((..(..((.((.((((((.--(((....))))))))).))))..)----..))))).)))))..-((((((...((......))..)))--)))....... ( -26.80)
>DroYak_CAF1 13552 107 - 1
AGUUGACAAUCUUAUUGUUGCUGACAGUGCACUGCACUGGCACACUGUGAAAAUGCCAUCUCACUGCCA--UUGUUUGUUUCAAAACAUUGAGCUCAAACAAAUAAAAA---
.(((..((((......))))..)))(((((...)))))((((....((((..........)))))))).--(((((((.(((((....)))))..))))))).......--- ( -24.10)
>consensus
AGUUGACAAUCUUAUUGUUGCUGACAGUGC__UGCACUGGCACACUGUGAGAAUGG____GUGGGCUAAAACUAA_UGUUUUAAAAGCAGGAACUCAAAA__ACAAAAAA__
((((..((.((((((.(((((...((((((...))))))))).)).)))))).))......(((.......))).................))))................. (-14.35 = -13.85 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:28 2006