Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 244,349 – 244,463 |
Length | 114 |
Max. P | 0.859476 |
Location | 244,349 – 244,463 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.79 |
Mean single sequence MFE | -36.13 |
Consensus MFE | -32.75 |
Energy contribution | -32.87 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -2.21 |
Structure conservation index | 0.91 |
SVM decision value | 0.82 |
SVM RNA-class probability | 0.859476 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 244349 114 - 22224390 CGGCAGGCUUCCAAGGAGGAGGCGA------GUGUCAGUUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUUAUUAUUGAUCAUCGCGAU ..((..((((((.....))))))((------..((((((..(((((((.(((......(((((...((((((.......))))))))))))))))))))).....))))))..))))... ( -34.50) >DroSim_CAF1 13081 114 - 1 CGGCAGGCUUCCAAGGAGGAGGCGA------GUGUCAGUUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUUAUUAUUGAUCAUCGCGAU ..((..((((((.....))))))((------..((((((..(((((((.(((......(((((...((((((.......))))))))))))))))))))).....))))))..))))... ( -34.50) >DroYak_CAF1 14113 120 - 1 CGGCAGGCCUCCAAAGAGGAGGCGAGUGCGAGUGUCAGGUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUAAUUAUUGAUCAUCGCGAA ..((..((((((.....))))))..))((((..(((((...(((((((.(((......(((((...((((((.......)))))))))))))))))))))......)))))..))))... ( -39.40) >consensus CGGCAGGCUUCCAAGGAGGAGGCGA______GUGUCAGUUUAUGGGUUUCAUUAAAUAUUUGCCCAUCGAUGAUUUGACCAUCGAGCAAAGUGAACUCAUUUAUUAUUGAUCAUCGCGAU ..((..((((((.....))))))........((((((((..(((((((.(((......(((((...((((((.......))))))))))))))))))))).....))))).))).))... (-32.75 = -32.87 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:28 2006