| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,266,082 – 14,266,187 |
| Length | 105 |
| Max. P | 0.967288 |
| Location | 14,266,082 – 14,266,187 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.38 |
| Mean single sequence MFE | -28.95 |
| Consensus MFE | -21.87 |
| Energy contribution | -23.48 |
| Covariance contribution | 1.61 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.76 |
| SVM decision value | 1.61 |
| SVM RNA-class probability | 0.967288 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14266082 105 + 22224390 AGACA------A-UUUGGGUGACCGAUGAGUCGUAUGAGUAAUAUUUUGCGUGUCUCUAUGAAAAAUUCAUGCGACUUGCAAUCGCUCACCUCGUUUCUCCUUUCUUUUGC--------U .((.(------(-...((((((.(((((((((((((((((....((((.((((....)))))))))))))))))))))...)))).))))))...)).))...........--------. ( -29.30) >DroPse_CAF1 9526 79 + 1 ------------------GGGGGGGGGGAGUGGUGGGGGCAACUCUUUUC----UUUUAUGAAAAAUUCAUGCGACUUCCAAUCGCUCACCGAGGCUCCUC------------------- ------------------.((((((((((((.((.(((....)))(((((----......)))))......)).))))))..(((.....)))..))))))------------------- ( -25.50) >DroSec_CAF1 6748 105 + 1 AGACA------A-UUUGGGUGACCGAUGAGUCGUAUGAGUAAUAUUUUGCGUGUCUCUAUGAAAAAUUCAUGCGACUUGCAAUCGCUCACCUCGUUUCGCCUUUCUUUUGC--------U .((.(------(-(..((((((.(((((((((((((((((....((((.((((....)))))))))))))))))))))...)))).)))))).))))).............--------. ( -29.40) >DroSim_CAF1 10740 105 + 1 AGACA------A-UUUGGGUGACCGAUGAGUCGUAUGAGUAAUAUUCUGCGUGUCUCUAUGAAAAAUUCAUGCGACUUGCAAUCGCUCACCUCGUUUCUCCUUUCUUUUGC--------U .((.(------(-...((((((.(((((((((((((((((....(((.............)))..)))))))))))))...)))).))))))...)).))...........--------. ( -28.22) >DroEre_CAF1 9871 104 + 1 AGACA------A-UUCGGGUGACCGAUGAGUCGUAUGAGUAAUAUUUUGCGUGUGUCUAUGAAAAAUUCAUGCGACUUGCAAUCGCUCACCUCGUUUCUUCUUUCUUUCCC--------- (((..------(-..(((((((.(((((((((((((((((....((((.((((....)))))))))))))))))))))...)))).))))).))..)..))).........--------- ( -31.30) >DroYak_CAF1 9959 120 + 1 AGGCAAAGACAAUUUUGGGUGACCGAUGAGUCGUAUGAGUAAUAUUUUGCGUGUCUCUAUGAAAAAUUCAUGCGACUUGCAAUCGCUCACCUCGUUUCUUCAUUCGUUCCCAAUACUCGU .....((((.(((...((((((.(((((((((((((((((....((((.((((....)))))))))))))))))))))...)))).)))))).))))))).................... ( -30.00) >consensus AGACA______A_UUUGGGUGACCGAUGAGUCGUAUGAGUAAUAUUUUGCGUGUCUCUAUGAAAAAUUCAUGCGACUUGCAAUCGCUCACCUCGUUUCUCCUUUCUUUUGC________U ................((((((.(((((((((((((((((....((((.((((....)))))))))))))))))))))...)))).))))))............................ (-21.87 = -23.48 + 1.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:18 2006