| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,262,738 – 14,262,834 |
| Length | 96 |
| Max. P | 0.608784 |
| Location | 14,262,738 – 14,262,834 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 81.79 |
| Mean single sequence MFE | -28.40 |
| Consensus MFE | -16.12 |
| Energy contribution | -16.23 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.608784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14262738 96 + 22224390 GAAGGAACAACGAC------AACGACAUCGUGACCAUGAUGACUGAGGAGCCCAGUGGCCAGGUUACAGUGACCAAAACCACAGCACUAC-CAAGUUUCCUUC---- ((((((((......------.....((((((....)))))).(((.((.(((....)))..((((.....))))....)).)))......-...).)))))))---- ( -24.80) >DroSec_CAF1 3467 98 + 1 GAAGGAACAACGAC------AACGACAUCGUGACCAUGAUGACUGAGGUU-UUGGCCGCCAGG-UACAGUGGCCAAAACCACAGCACUAC-CAAGUUCCAUUCGAAA ((((((((......------.....((((((....)))))).(((.((((-((((((((....-....)))))))))))).)))......-...))))).))).... ( -39.30) >DroYak_CAF1 6565 106 + 1 GAAGGAACAACGACAACGACAACGACAUCGUGACCAUGAUGACCGAGGAGCCCAUUGACCAGG-UACAGUGGCCAAAACCACAAAACUACCCAAGUUUCUUUCGAAA ((((((((..((....((....)).((((((....))))))..)).((.(((.........))-)...((((......))))........))..))))))))..... ( -21.10) >consensus GAAGGAACAACGAC______AACGACAUCGUGACCAUGAUGACUGAGGAGCCCAGUGGCCAGG_UACAGUGGCCAAAACCACAGCACUAC_CAAGUUUCAUUCGAAA ((((((((.................((((((....))))))...........................((((......))))............))))).))).... (-16.12 = -16.23 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:17 2006