Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,262,442 – 14,262,535 |
Length | 93 |
Max. P | 0.935283 |
Location | 14,262,442 – 14,262,535 |
---|---|
Length | 93 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 89.95 |
Mean single sequence MFE | -35.57 |
Consensus MFE | -29.65 |
Energy contribution | -30.90 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.09 |
Mean z-score | -2.17 |
Structure conservation index | 0.83 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935283 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14262442 93 + 22224390 ---GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCGCAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA ---(((((((((((((..(((((((.(((.......)))..)))))...))..)))).)))))))))..(((((((.((....)).)))).))).. ( -37.40) >DroSec_CAF1 3169 93 + 1 ---GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCACAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA ---(((((((((((((..(((((((.(((.......)))..)))))...))..)))).)))))))))..(((((((.((....)).)))).))).. ( -37.80) >DroSim_CAF1 7152 93 + 1 ---GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCACAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA ---(((((((((((((..(((((((.(((.......)))..)))))...))..)))).)))))))))..(((((((.((....)).)))).))).. ( -37.80) >DroEre_CAF1 6397 90 + 1 GGU------UGGUCCCCACUGAAGAAGCAUGUCAUUUGCGGUCCUCGAGAGGCGGCGACCACAAGUCAGGGCUUCCUUGACACCGCAGAAUGGCAA .((------(..((......))...))).((((((((((((((.(((.....))).))))....(((((((...)))))))...)))).)))))). ( -29.30) >consensus ___GAUUUGUGGCGCCAACUGAAGGAGCAUGUCAUUUGUGGUCUUCGAGAGGCGGCGACCACAAGUCAGGGCUUCUUCGACACCGCAGAAUGCCAA .....(((((((.(.....(((((((((.((..((((((((((.(((.....))).))))))))))))..))))))))).).)))))))....... (-29.65 = -30.90 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:16 2006