Locus 5494

Sequence ID X_DroMel_CAF1
Location 14,261,857 – 14,261,961
Length 104
Max. P 0.563450
window8911

overview

Window 1

Location 14,261,857 – 14,261,961
Length 104
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 90.63
Mean single sequence MFE -28.32
Consensus MFE -24.10
Energy contribution -24.70
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.28
Structure conservation index 0.85
SVM decision value 0.06
SVM RNA-class probability 0.563450
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14261857 104 - 22224390
ACUUGAUGGCGCCAUUUAUUGUUUGGCAUAAAAACGCUUUCGAAAAUUGUUAAAUCGCAUGGAAAAUUGUUGCCAUUAAGGGACAUGUGCAAGCUGCACG--------------CCAC--
.(((((((((((((.........)))).....((((.((((.(....(((......)))).))))..)))))))))))))((....((((.....)))).--------------))..-- ( -27.50)
>DroSec_CAF1 2588 104 - 1
ACUUGAUGGCGCCAUUUAUUGUUUGGCAUAAAAACGCGUUCGAAAAUUGUUAAAUCGCAUGGAAAAUUGUUGCCAUUAAGGGACAUGUGCAAGCUGCACG--------------CCAC--
.(((((((((((((.........))))........(((((..(......)..)).))).............)))))))))((....((((.....)))).--------------))..-- ( -28.80)
>DroSim_CAF1 6582 104 - 1
ACUUGAUGGCGCCAUUUAUUGUUUGGCAUAAAAACGCGUUCGAAAAUUGUUAAAUCGCAUGGAAAAUUGUUGCCAUUAAGGGACAUGUGCAAGCUGCACG--------------CCAC--
.(((((((((((((.........))))........(((((..(......)..)).))).............)))))))))((....((((.....)))).--------------))..-- ( -28.80)
>DroEre_CAF1 5850 120 - 1
ACUUGAUGGCGCCAUUUAUUGUUUGGCAUAAAAACGCGCUCGAAAAUUGUUAAAUCGCAUGGAAAACUGUUGCCAUUAAGGGACAUGUGCAAGCUGCAAGUUGCAAGCUGCAAGUUGCAA
.(((((((((((((.........))))........(((....((.....))....))).............)))))))))..............(((((.((((.....)))).))))). ( -33.00)
>DroYak_CAF1 5630 106 - 1
ACUUGAUGGCGCCAUUUAUUGUUUGGCAUAAAAACGCGCUCGAAAAUUGUUAAAUCGCAUGGAAAAUUGUUGCCAUUAAGGGACAUGUGCAAGCUGCAGG--------------CUACAG
.(((((((((((((.........))))........(((....((.....))....))).............))))))))).....(.(((.....))).)--------------...... ( -23.50)
>consensus
ACUUGAUGGCGCCAUUUAUUGUUUGGCAUAAAAACGCGUUCGAAAAUUGUUAAAUCGCAUGGAAAAUUGUUGCCAUUAAGGGACAUGUGCAAGCUGCACG______________CCAC__
.(((((((((((((.........))))........(((....((.....))....))).............)))))))))......((((.....))))..................... (-24.10 = -24.70 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:15 2006