Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,260,566 – 14,260,657 |
Length | 91 |
Max. P | 0.997279 |
Location | 14,260,566 – 14,260,657 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 74.61 |
Mean single sequence MFE | -19.88 |
Consensus MFE | -12.12 |
Energy contribution | -14.38 |
Covariance contribution | 2.25 |
Combinations/Pair | 1.15 |
Mean z-score | -2.53 |
Structure conservation index | 0.61 |
SVM decision value | 2.83 |
SVM RNA-class probability | 0.997279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14260566 91 + 22224390 CACUACAAAUCACACUGAGAUGCAUUAUGAUUAGUUGGUGCGAGCGCUUUCAUUUAUUUUAUUCAAAUUUCAGUCAGCCCAAAUACAACUA .............((((((((((((((........))))))(((....)))...............))))))))................. ( -12.80) >DroSec_CAF1 1396 81 + 1 CACUAGAAAGCUGACUGAGAGGCAUUAUGAUUAGUUGCUGCGAGCGGCUUAAAUUAUUUUAUUCAAAUUUCAGUCAGCCAA---------- .........(((((((((((.(.((.((((((((((((.....))))))..))))))...)).)...)))))))))))...---------- ( -25.40) >DroSim_CAF1 4989 81 + 1 CACCAUAAAGCUGACUGAGAGGCAUUAUGAUUAGUUGCUGCGAGCGGAUUAAAUUAUUUUAUUCAAAUUUCAGUCAGCCAA---------- .........(((((((((((......((((.(((((.(((....)))....)))))..)))).....)))))))))))...---------- ( -22.40) >DroEre_CAF1 4789 71 + 1 CACUAAAAAGC-GACUGAAAGGCAUGAUGAUUAGUUACUUAAUGU-------AUUAUUGUGUUAAAAUUUCAGUCAGCG------------ .........((-((((((((((((..(((((..(((....)))..-------)))))..))))....)))))))).)).------------ ( -18.90) >consensus CACUAAAAAGCUGACUGAGAGGCAUUAUGAUUAGUUGCUGCGAGCGG_UUAAAUUAUUUUAUUCAAAUUUCAGUCAGCCAA__________ .........(((((((((((...........(((((((((....))))...)))))...........)))))))))))............. (-12.12 = -14.38 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:13 2006