Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,259,700 – 14,259,795 |
Length | 95 |
Max. P | 0.952162 |
Location | 14,259,700 – 14,259,795 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 92.03 |
Mean single sequence MFE | -25.34 |
Consensus MFE | -19.58 |
Energy contribution | -19.34 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -2.42 |
Structure conservation index | 0.77 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952162 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14259700 95 + 22224390 UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAUUUGCUGC-GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA ............(((((((((((.......)))))))))))(((((-((.((....)).).))))))((((((....))))))............. ( -25.90) >DroPse_CAF1 3683 95 + 1 UUUUCAUUAUGAAAAUGCAGCUGGA-GAUGCAGUUGCUGUUGCAGUUGCAGUUGUUGUUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUCUGA (((((.....))))).(((((((..-....)))))))((((((((((((((.........))))))))))..)))).................... ( -25.20) >DroSec_CAF1 573 95 + 1 UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAGUUGCUGC-GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA (((((.....))))).(((((((.((...((((..(((((......-)))))..))))..)).)))))))...........((((......)))). ( -25.00) >DroSim_CAF1 4103 95 + 1 UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAUUUGCUGC-GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA ............(((((((((((.......)))))))))))(((((-((.((....)).).))))))((((((....))))))............. ( -25.90) >DroPer_CAF1 1245 89 + 1 UUUUCAUUAUGAAAAUGCAGCUGGA-GAUGCAGUUGCUGUUGG------AGUUGUUGUUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUCUGA (((((.....))))).(((((((..-....)))))))..(..(------(((((((((....)))))((((((....)))))).....)))))..) ( -24.70) >consensus UUUUCAUUAUGAAAAUGCAGCUGGAAAAUGCAGUUGCAGUUGCUGC_GCUGUUGUUGCUGUUGCAGCUGUUAAACAAUUAGCAAAUUAAACUUUGA (((((.....))))).(((((((.......))))))).............((((((((....)))))((((((....)))))).....)))..... (-19.58 = -19.34 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:12 2006