Locus 5489

Sequence ID X_DroMel_CAF1
Location 14,256,442 – 14,256,562
Length 120
Max. P 0.881830
window8902

overview

Window 2

Location 14,256,442 – 14,256,562
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 97.08
Mean single sequence MFE -38.67
Consensus MFE -36.80
Energy contribution -37.18
Covariance contribution 0.38
Combinations/Pair 1.05
Mean z-score -2.00
Structure conservation index 0.95
SVM decision value 0.92
SVM RNA-class probability 0.881830
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14256442 120 - 22224390
CAUUUGCUAAGUGUUAAGUGCCAUUUUUGGCAUCCAUGAUUCGUGAGCCGUUGGCACUUUUCUAUUUUGAAGCGUAGGUGUUGUAGGUGCGAGAACAUUUUUGCGCCACGAUUACACCGA
.....((((((((..((((((((....((((...((((...)))).)))).))))))))...)))))...)))...((((((((.(((((((((....))))))))))))...))))).. ( -40.60)
>DroSim_CAF1 915 120 - 1
CAUUUGCUAAGUGUUAAGUGCCAUUUUUGGCAUCCAUGAUUCGUGAGCCGGUGGCACUUUUCUAUUUUGAAGCGUAGGUGUUGCAGGUGCGAGAACAUUUUUGCGCCACGAUUACACCGA
.....((((((((..(((((((((...((((...((((...)))).)))))))))))))...)))))...)))...(((((..(.(((((((((....)))))))))..)...))))).. ( -40.00)
>DroEre_CAF1 961 120 - 1
CAUUUGCUAAGUGUUAAGUGCCAUUUUUGGCAUCCAUGAUUCGUGAGCCGGUGGCACUUUCCUAUUUUGAAGCGUAGGUGUUGCAGGUGCGAGAACAUUUUUGCGCCACGAUUACACCGA
.....((((((((..(((((((((...((((...((((...)))).)))))))))))))..).))))...)))...(((((..(.(((((((((....)))))))))..)...))))).. ( -40.30)
>DroYak_CAF1 921 120 - 1
CAUUUGCUAAGUGUUAAGUGUCAUUUUUGGCAUCCAUGAUUCCUGAGCCGGUGGCACUUUUCUAUUUUGAGGCGUAGGCGUUGCAGGUGCGAGAACAUUUUUGCGCCACGAUUACACCGA
......(.(((((..(((((((((...((((.((..........)))))))))))))))...))))).).((.((((.(((....(((((((((....)))))))))))).)))).)).. ( -33.80)
>consensus
CAUUUGCUAAGUGUUAAGUGCCAUUUUUGGCAUCCAUGAUUCGUGAGCCGGUGGCACUUUUCUAUUUUGAAGCGUAGGUGUUGCAGGUGCGAGAACAUUUUUGCGCCACGAUUACACCGA
.....((((((((..(((((((((...((((...((((...)))).)))))))))))))..).))))...)))...(((((....(((((((((....)))))))))......))))).. (-36.80 = -37.18 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:08 2006