Locus 5488

Sequence ID X_DroMel_CAF1
Location 14,255,050 – 14,255,151
Length 101
Max. P 0.698642
window8901

overview

Window 1

Location 14,255,050 – 14,255,151
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 86.96
Mean single sequence MFE -18.72
Consensus MFE -13.12
Energy contribution -13.00
Covariance contribution -0.12
Combinations/Pair 1.23
Mean z-score -1.81
Structure conservation index 0.70
SVM decision value 0.35
SVM RNA-class probability 0.698642
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14255050 101 + 22224390
UUCCAUUCGGCAGGUUUUUAACCGAAUGGAAAUUAAACCGGUAAAAACAUGAUUGUAGUUUUAAUAAAACAUAAACAAGAGUCAAAAAUAUGUAUUGAAUA
((((((((((...........)))))))))).......(((((......(((((.(.((((...........)))).).)))))........))))).... ( -19.44)
>DroSim_CAF1 140339 101 + 1
UUCCAUUCGGCAGGUUUUUAACCGAAUUGAAAUCAAACCGGUAAAAACAUGAUUGUAGUUUUAAUAAAACAUAAACAAGAGUCAAAAAUAUGAAUUGAAUA
(((.(((((....(((((((.(((..(((....)))..)))))))))).(((((.(.((((...........)))).).)))))......))))).))).. ( -19.30)
>DroEre_CAF1 145589 100 + 1
UUCCAUUCGGCAGGCUUUUAACCGAAUGCAAAUUAAAGCGGUAAAAACACGCUUGUAGUUUCAAUAAAACAUAAGCAAGA-UCGAAAACACGGAUUGACAU
.((.(((((...(..((((.((((..(........)..)))).))))..)((((((.((((.....))))))))))....-.........))))).))... ( -17.80)
>DroYak_CAF1 150726 101 + 1
UUCCAUUCGGCAGGCUUUUAGCUGAAUGGGAAUCGAACCAGUAAAAACAUGAUUGUACUUUUAAUAAAACAUAAACAAGAGUCAAAAACAUAAAUUGAACA
(((((((((((.........))))))))))).((((....((....))....(((.((((((..............))))))))).........))))... ( -18.34)
>consensus
UUCCAUUCGGCAGGCUUUUAACCGAAUGGAAAUCAAACCGGUAAAAACAUGAUUGUAGUUUUAAUAAAACAUAAACAAGAGUCAAAAACAUGAAUUGAAUA
((((((((((...........)))))))))).((((....((....)).(((((.(.((((...........)))).).)))))..........))))... (-13.12 = -13.00 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:07 2006