Locus 5486

Sequence ID X_DroMel_CAF1
Location 14,248,956 – 14,249,046
Length 90
Max. P 0.596898
window8898

overview

Window 8

Location 14,248,956 – 14,249,046
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 98.67
Mean single sequence MFE -31.18
Consensus MFE -30.22
Energy contribution -30.62
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.21
Structure conservation index 0.97
SVM decision value 0.13
SVM RNA-class probability 0.596898
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14248956 90 - 22224390
GAAAAGUCAGCGACUAAGCCAAGUCGACGACGCAUCAAGUGCAGUGCGUUCGUGACUGUGGCAACUCUGGCGGGCAUUUCCGGCCACUUC
....((((...))))..((((((((.(((((((((........))))).)))))))).)))).....((((.((.....)).)))).... ( -32.10)
>DroSec_CAF1 157135 90 - 1
GAAAAGUCAGCGACUAAGCCAAGUCGACGACGCAUCAAGUGCAGUGCGUUCGUGACUGUGGCAACUCUGGCGGGCAUUUCCGGCCACUUC
....((((...))))..((((((((.(((((((((........))))).)))))))).)))).....((((.((.....)).)))).... ( -32.10)
>DroSim_CAF1 138487 90 - 1
GAAAAGUCAGCGACUAAGCCAAGUCGACGACGCAUCAAGUGCAGUGCGUUCGUGACUGUGGCAACUCUGGCGGGCAUUUCCGGCCACUUC
....((((...))))..((((((((.(((((((((........))))).)))))))).)))).....((((.((.....)).)))).... ( -32.10)
>DroEre_CAF1 144277 90 - 1
GAAAAGUCAGCGACUAAGCCAAGUCGACGACGCAUCAAGUGCACUGCGUUCGUGACUGUGGCAACUCUGGCGCGCAUUUCCGGCCACUUC
....((((...))))..((((((((.((((((((..........)))).)))))))).)))).....((((.((......)))))).... ( -27.50)
>DroYak_CAF1 149281 90 - 1
GAAAAGUCAGCGACUAAGCCAAGUCGACGACGCAUCAAGUGCAGUGCGUGCGUGACUGUGGCAACUCUGGCGGGCAUUUCCGGCCACUUC
....((((...))))..((((((((.(((((((((........)))))).))))))).)))).....((((.((.....)).)))).... ( -32.10)
>consensus
GAAAAGUCAGCGACUAAGCCAAGUCGACGACGCAUCAAGUGCAGUGCGUUCGUGACUGUGGCAACUCUGGCGGGCAUUUCCGGCCACUUC
....((((...))))..((((((((.(((((((((........)))))).))))))).)))).....((((.((.....)).)))).... (-30.22 = -30.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:04 2006