| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,248,432 – 14,248,530 |
| Length | 98 |
| Max. P | 0.621955 |
| Location | 14,248,432 – 14,248,530 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 94.56 |
| Mean single sequence MFE | -25.53 |
| Consensus MFE | -24.06 |
| Energy contribution | -23.73 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.94 |
| SVM decision value | 0.18 |
| SVM RNA-class probability | 0.621955 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14248432 98 + 22224390 ACGUCAAGGGUUUUGGCUGCGAUAAGAAAGAGACAUCUUUGAAGAAGAGGCACAUGCGAUGCGGAAGAGGAAGCAGCUGAAAAGGACGAAAAGGAGCC .((((.....(((..(((((......(((((....))))).........((....))....(....).....)))))..)))..)))).......... ( -24.20) >DroSec_CAF1 156640 98 + 1 ACGUCAAGGGUUUUGGCUGCGAUAAGGAAGAGACAUCCUCGAAGAGGAGGCACAGGCGAUGCGGCAGAGGAAGCAGCUGAAAAGGAGGAAAAGGAGCC .(.((.....(((..(((((.....(.......).(((((.....(.(.((....))..).)....))))).)))))..)))..)).).......... ( -23.50) >DroSim_CAF1 137977 98 + 1 ACGUCAAGGGUUUUGGCUGCGAUAAGGAAGAGACAUCCUCGACGAGGAGGCACAGGCGAUGCGGCAGAGGAAGCAGCUGAAAAGGACGAAAAGGAGCC .((((.....(((..(((((.....(.......).(((((..((.....((....))....))...))))).)))))..)))..)))).......... ( -28.90) >consensus ACGUCAAGGGUUUUGGCUGCGAUAAGGAAGAGACAUCCUCGAAGAGGAGGCACAGGCGAUGCGGCAGAGGAAGCAGCUGAAAAGGACGAAAAGGAGCC .((((.....(((..(((((...............(((((...))))).((((....).)))..........)))))..)))..)))).......... (-24.06 = -23.73 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:01 2006