| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 14,248,096 – 14,248,210 |
| Length | 114 |
| Max. P | 0.547091 |
| Location | 14,248,096 – 14,248,210 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 71.88 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -13.43 |
| Energy contribution | -13.43 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547091 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14248096 114 + 22224390 ACUCAUGUGUGCCUCAGGUGCACUGAGGAAAAUGU-UGUAGAAU-----AGGAAAUUCUUAUAUAUUUAUAUAAUUGAAACUAAUGAUGCAUAUAUAUGUUACUUUUAAAAUAAUUGUAU .((((.(((..((...))..)))))))..((((((-...(((((-----.....)))))...))))))(((((((((...........((((....))))...........))))))))) ( -23.65) >DroSim_CAF1 137651 105 + 1 ACUCAUGUGUGCCUCAGGUGCACUGAGGAAAAUGAAGAUAUAAU-----AGGAAAUUUGUGUAUAUUUAUAUUAUUUAAAG----------UAUCCAUGUUAUUCUCAAAAUAAUUCUAA .((((.(((..((...))..))))))).....(((.((.(((((-----((((.((((..(((.........)))...)))----------).))).)))))))))))............ ( -22.80) >DroYak_CAF1 148406 117 + 1 ACUCAUGUGUGCCUCAGGUGCACUGAGAAAAAUGC-UAUAGAACCGGGAAGGAAAUUCGUAGAUAUGUUAAGUAUUUAAGCUAAUGCUA--UUGCUAUGUAAUACUCCAAUGAAUUGUAA .((((.(((..((...))..))))))).....(((-.......((.....)).(((((((.(...(((((((((....(((....))).--.))))...)))))...).)))))))))). ( -24.50) >consensus ACUCAUGUGUGCCUCAGGUGCACUGAGGAAAAUGA_UAUAGAAU_____AGGAAAUUCGUAUAUAUUUAUAUUAUUUAAACUAAUG_U___UAUCUAUGUUAUUCUCAAAAUAAUUGUAA .((((.(((..((...))..)))))))............................................................................................. (-13.43 = -13.43 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:00 2006