Locus 5482

Sequence ID X_DroMel_CAF1
Location 14,247,730 – 14,247,820
Length 90
Max. P 0.681452
window8893

overview

Window 3

Location 14,247,730 – 14,247,820
Length 90
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 88.74
Mean single sequence MFE -26.08
Consensus MFE -19.24
Energy contribution -19.24
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -1.81
Structure conservation index 0.74
SVM decision value 0.31
SVM RNA-class probability 0.681452
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14247730 90 - 22224390
GGGGCGUGGUCCCAAAGAUUAGCAUUCAAACG------GUACAGAAAGCAGUCGCUUUGCCUUGGCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU
(((((...)))))((((((.(((.(((((...------......(((((....)))))((....))..))))).))).))))))............ ( -23.60)
>DroSec_CAF1 155959 90 - 1
GGGGCGUGGUCCCAAAGAUUAGCAUUCAAAUG------UGAGAGGAAGCAGCCGCUUUGCCUUGCCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU
(((((...)))))((((((.(((.(((((..(------..((..(((((....)))))..))..)...))))).))).))))))............ ( -26.80)
>DroSim_CAF1 137284 90 - 1
GGGGCGUGGUCCCAAAGAUUAGCAUUCAAAUG------UUAGAGGAAGCAGCCGCUUUGCCUUGGCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU
(((((...)))))((((((.(((.(((((.((------(((.(((.(((....)))...)))))))).))))).))).))))))............ ( -27.40)
>DroEre_CAF1 143140 96 - 1
GGGGCGUGGUCCCGAAGAUUAGCAUUCAAAUGGAGGAGGAAGAGGAAGCAGUCGCUUUGGCUUGCCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU
(((((...)))))((((((.(((.(((((.(((......(((..(((((....)))))..))).))).))))).))).))))))............ ( -27.70)
>DroYak_CAF1 148035 90 - 1
GAGGCGUGGUCGCAAGGAUCAGCAUUGAAGUG------GAAGAGGAAGCAGUCACUUUGGCUUGCCAAUUGAAAGUUGGUCUUUGAUUGAAAUAGU
...((....((.(((((((((((.((.((.((------((((..((((......))))..))).))).)).)).)))))))))))...))....)) ( -24.90)
>consensus
GGGGCGUGGUCCCAAAGAUUAGCAUUCAAAUG______GAAGAGGAAGCAGUCGCUUUGCCUUGCCAAUUGAAAGUUUGUCUUUGAUUGAAAUAGU
(((((...)))))((((((.(((.(((((...............(((((....)))))((....))..))))).))).))))))............ (-19.24 = -19.24 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:59 2006