Locus 5481

Sequence ID X_DroMel_CAF1
Location 14,246,287 – 14,246,407
Length 120
Max. P 0.757847
window8892

overview

Window 2

Location 14,246,287 – 14,246,407
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.68
Mean single sequence MFE -24.38
Consensus MFE -21.70
Energy contribution -21.34
Covariance contribution -0.36
Combinations/Pair 1.10
Mean z-score -1.35
Structure conservation index 0.89
SVM decision value 0.49
SVM RNA-class probability 0.757847
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14246287 120 + 22224390
AGUCAAAGAAUCGUUUGUUUCUGUCGGCAAAAGUCAUGAAAACUGUGAGUUAUGUGUGUGUGUCGGGUAGGAAAUGAAAAAUUGAGGCAGACAAACUGUUGGAAUGGUUAAAGACGCAAA
.(((....((((((((((((((.((((((.....(((((..........)))))......))))))...))))))..........(((((.....))))).))))))))...)))..... ( -24.60)
>DroSec_CAF1 154561 112 + 1
AGUCAAAGAAUCGUUUGUUUCUGUCGGCAAAAGUCAUGAAAACUGUGAGUUAUGUG--UGUGUCGGGAAGGAAAUGAAAAAUUGAGGCAGACAAACUGCUGGAAUGGUUAAAGA------
..((((....((((((.(((((..(((((.....(((((..........)))))..--..)))))))))).))))))....))))(((((.....)))))..............------ ( -24.00)
>DroSim_CAF1 135874 112 + 1
AGUCAAAGAAUCGUUUGUUUCUGUCGGCAAAAGUCAUGAAAACUGUGAGUUAUGUG--UGUGUCGGGAAGGAAAUGAAAAAUUGAGGCAGACAAACUGCUGGAAUGGUUAAAGG------
..((((....((((((.(((((..(((((.....(((((..........)))))..--..)))))))))).))))))....))))(((((.....)))))..............------ ( -24.00)
>DroEre_CAF1 141830 108 + 1
AGUCAAGGAAUCGUUUGUUUCUGUCGGUAAAAGUCAUGAAAACUGUGAGUUAUG------UGUCGGGGAAGAAAUGAAAAAUUGAGGCAGACAAACUGCUGUAAUGGUUAAAGG------
..((((....((((((.(((((..((..(.((.((((.......)))).))...------)..))))))).))))))....))))(((((.....)))))..............------ ( -22.50)
>DroYak_CAF1 146513 108 + 1
AGUCAAAGAAUCGUUUGUUUCUGUCGGCAAAAGUCAUGAAAACUGUGAGUUAUG------UGUCGGAAAAGAAAUGAAAAAUUGAGGCAGUCGAACUGCUCGAAUGGUUAAAGG------
........((((((((((((((.((((((.((.((((.......)))).))...------))))))...))))))........(((.(((.....)))))))))))))).....------ ( -26.80)
>consensus
AGUCAAAGAAUCGUUUGUUUCUGUCGGCAAAAGUCAUGAAAACUGUGAGUUAUGUG__UGUGUCGGGAAGGAAAUGAAAAAUUGAGGCAGACAAACUGCUGGAAUGGUUAAAGG______
........((((((((((((((.((((((.....(((((..........)))))......))))))...))))))..........(((((.....))))).))))))))........... (-21.70 = -21.34 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:58 2006