Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 14,245,420 – 14,245,525 |
Length | 105 |
Max. P | 0.798490 |
Location | 14,245,420 – 14,245,525 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 86.61 |
Mean single sequence MFE | -24.39 |
Consensus MFE | -16.96 |
Energy contribution | -18.77 |
Covariance contribution | 1.81 |
Combinations/Pair | 1.04 |
Mean z-score | -2.06 |
Structure conservation index | 0.70 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 14245420 105 - 22224390 AAAA-------CCCUAUC-CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGACUGCCCACCCGCUGUCCACCCACUCGUGCAAC--- ....-------.......-...((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...--- ( -27.02) >DroSec_CAF1 153686 108 - 1 AAAA-------CCCUAUC-CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGACUGCCCACCCGCUGUCCACCCACUCGUGCACCACC ....-------.......-...((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...... ( -27.02) >DroEre_CAF1 141001 108 - 1 AAAA-------CCCUAUU-CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGCCUGCCCACCCGCUGUCCACCCACUCGUGCACCACC ....-------.......-...((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...... ( -27.02) >DroPer_CAF1 132484 115 - 1 AAAACCCUCAGCCCUAUCCCCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUCCAGCGAAAUUUAUGCUUAGACAGAAGACCCCCCCACCGCCCCCCACUGC-CCACC ..........................(((((.(((((((((....(((((....)))))....)))...))))))..)))))............................-..... ( -16.50) >consensus AAAA_______CCCUAUC_CCAGCUCGUUUAUCAUGGACGCAUAUUGCUGACCGCAGCAUGCAGCUAAAUUUAUGCUUAGACUGCCCACCCGCUGUCCACCCACUCGUGCACCACC ......................((.((.......(((((((....(((((....))))).((((((((........)))).))))......)).)))))......)).))...... (-16.96 = -18.77 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:57 2006