Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,561,896 – 1,562,015 |
Length | 119 |
Max. P | 0.780711 |
Location | 1,561,896 – 1,562,015 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 97.88 |
Mean single sequence MFE | -22.25 |
Consensus MFE | -20.55 |
Energy contribution | -20.88 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 0.92 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780711 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1561896 119 - 22224390 GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-AUGAAAAUU ((((...((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))))))))).-......... ( -22.60) >DroPse_CAF1 32012 119 - 1 GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-UUGAAAAUU ((((...((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))))))))).-......... ( -22.60) >DroSec_CAF1 23528 120 - 1 GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUUCAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCAAAUGAAAAUU ((((...((((((((((.((((...((((...))))....))))..(((.......(((...((((((((....)))))))).))).....))).))))))))))))))........... ( -22.10) >DroMoj_CAF1 26064 119 - 1 GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUGUUGCU-AUGAAAAUU .((.(((((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))..))))))-.))...... ( -22.90) >DroAna_CAF1 29708 119 - 1 GGAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-AUGAAAAUA .....((((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).))))))))))..)).-......... ( -20.70) >DroPer_CAF1 31708 119 - 1 GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA-UUGAAAAUU ((((...((((((((((.((((...((((...))))....))))..(((..(((.....)))((((((((....)))))))).........))).)))))))))))))).-......... ( -22.60) >consensus GCAAAGCGAUUUGCAUACAAAUUUGGCACGAAGUGUAAAUAUUUAAGCAGAUACAAAGUGUGAGUAUUAAAUUUUUGAUACUAAUUAAUUAUGCAUGUGUAAAUUUUGCA_AUGAAAAUU ((((...((((((((((.((((...((((...))))....))))..(((.......(((...((((((((....)))))))).))).....))).))))))))))))))........... (-20.55 = -20.88 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:47:26 2006