Locus 5479

Sequence ID X_DroMel_CAF1
Location 14,243,548 – 14,243,663
Length 115
Max. P 0.592787
window8890

overview

Window 0

Location 14,243,548 – 14,243,663
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.87
Mean single sequence MFE -19.50
Consensus MFE -13.64
Energy contribution -14.51
Covariance contribution 0.87
Combinations/Pair 1.08
Mean z-score -1.60
Structure conservation index 0.70
SVM decision value 0.12
SVM RNA-class probability 0.592787
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14243548 115 - 22224390
ACCAUGUACUAAUAACUAAGAGUUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUACUUUUCA-----AAGUAGCGCAAAAGUUUCAUUUUCUUUGACAAAAGUUACACAAAAACAAUAA
....((((((.......(((((.......((((((((((((......((((....))))....-----.))))))))))))........))))).......)).))))............ ( -21.90)
>DroSec_CAF1 151772 119 - 1
CCCAUGUACUUAUAACUAAAAGCUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUGCUUUUCAAAUGAAAGUAGCGCAGAAGUUUUAUU-UCUUUGACAAAAGUUACACAAAAACAAUAA
....(((((((.......((((..((...((((((((((((......((((....))))(((....)))))))))))))))....))..-.)))).....))).))))............ ( -19.90)
>DroSim_CAF1 132459 119 - 1
CCGAUGUACUCAUAACUAAGAGCUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUACUUUUCGAAUGAAAGUAGCGCAGAAGUUUUAUU-UCUUUGACAAAAGUUACACAAAAACAAUAA
..((((..(((........)))..)))).((((((((((((......((((....))))(((....)))))))))))))))(((((...-.((((....)))).......)))))..... ( -21.50)
>DroYak_CAF1 143659 101 - 1
GCUA------------------CUUAUUAAUUUGUGCUGCUAAUAACAAGUCAACACUUUUCAGUUGAAUAUAGCUCAGAAGUUUUAUU-UCUUUGACAAAAGUUCCACAAAAACAAUAA
....------------------........((((((..(((......((((....)))).((((..(((((.((((....)))).))))-)..))))....)))..))))))........ ( -14.70)
>consensus
CCCAUGUACU_AUAACUAAGAGCUUAUUAUUUUGUGCUGCUAAUAAUAAGUAAAUACUUUUCAAAUGAAAGUAGCGCAGAAGUUUUAUU_UCUUUGACAAAAGUUACACAAAAACAAUAA
.............................((((((((((((......((((....))))..........))))))))))))(((((.....((((....)))).......)))))..... (-13.64 = -14.51 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:57 2006