Locus 5474

Sequence ID	X_DroMel_CAF1
Location	14,227,926 – 14,228,018
Length	92
Max. P	0.664639

overview

Window 1

Location	14,227,926 – 14,228,018
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	94.79
Mean single sequence MFE	-29.33
Consensus MFE	-22.84
Energy contribution	-22.84
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.82
Structure conservation index	0.78
SVM decision value	0.28
SVM RNA-class probability	0.664639
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14227926 92 + 22224390
CGGCUCUGCUCUGCCUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG
..((.(((((((((.....)).............((...(((.((((((..(.....)..)))))))))...))...)))))))))...... ( -28.20)
>DroSec_CAF1 136542 89 + 1
CGGCUCUGCUC---CUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCCG
..((.((((((---((...(((.................(((.((((((..(.....)..)))))))))..)))..))))))))))...... ( -28.81)
>DroSim_CAF1 116610 89 + 1
CGGCUCUGCUC---CUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCCG
..((.((((((---((...(((.................(((.((((((..(.....)..)))))))))..)))..))))))))))...... ( -28.81)
>DroEre_CAF1 124302 89 + 1
CGGCUCUGCUC---CACCUGCAACACCUUACACCGCUUCCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG
..((.((((((---(....(((.(((..............((.((((((..(.....)..))))))))))))))...)))))))))...... ( -26.93)
>DroYak_CAF1 127105 89 + 1
CCGCUCUGCUC---CGCCUGCAACACCUUUCUCCGCGUCCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG
.(((.((((((---((....).............(((..(((.((((((..(.....)..)))))))))..)))...))))))))))..... ( -33.90)
>consensus
CGGCUCUGCUC___CUCCUGCAACACCUUUCUCCGCUUUCUCUGAUGACCGCAAUUUGUAGUCAUUGAGUGUGCCAAGGAGCAGGCGACCUG
..............(.(((((....((((....(((...(((.((((((..(.....)..))))))))).)))..)))).))))).)..... (-22.84 = -22.84 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:49 2006