Locus 5471

Sequence ID X_DroMel_CAF1
Location 14,222,926 – 14,223,024
Length 98
Max. P 0.832930
window8876

overview

Window 6

Location 14,222,926 – 14,223,024
Length 98
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 87.17
Mean single sequence MFE -32.50
Consensus MFE -24.58
Energy contribution -25.10
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.76
SVM decision value 0.72
SVM RNA-class probability 0.832930
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 14222926 98 - 22224390
AUUCAAAAUAUCUGUGCAGAUCUGUUGUUGUUCCUGUU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAACAGCUCAUGGACGGAGUG-------------
..........(((((.((((.(((((((((((....((-------((((..((.((..(....)..)).))))))))..))))))))))).)).)).)))))...------------- ( -32.80)
>DroSec_CAF1 131472 98 - 1
AUUCAAAAUAUCUUUGCAGAUCUGUUGUUGUUCCUGGU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGCUCAUGGGUGGAGUG-------------
...........(((..(.((.(((((((((((..((((-------.((......(((....))).....)).))))...))))))))))).))....)..)))..------------- ( -28.10)
>DroSim_CAF1 110396 98 - 1
AUUCAAAAUAUCUCUGCAGAUCUGUUGUUGUUCCUGGU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGCUCAUGGGUGGAGUG-------------
...........(((..(.((.(((((((((((..((((-------.((......(((....))).....)).))))...))))))))))).))....)..)))..------------- ( -29.70)
>DroEre_CAF1 119279 105 - 1
AUUCAAAAUAUCUCUGCAGAUCUGUUGUUCUUCCUCGUUGGUUGCGACAUUGUUGCUUGUUGGCUUGUUGCAGCCGAGAGAUAACAGCAGCUCAUGGGCGGAGUG-------------
...........((((((.((.((((((((....(((.((((((((((((.....(((....))).)))))))))))))))..)))))))).))....))))))..------------- ( -41.80)
>DroYak_CAF1 121907 111 - 1
AUUCAAAAUAUCUCUGCAGAUCUGUUGUUGUUCCUGAU-------GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGUUCAUGGGCGAAGUGAGGGGUGGAGUGU
...........(((..(...(((....((((((.(((.-------.((((((((((((.((((((......))))))))).)))))).)))))).))))))....))).)..)))... ( -30.10)
>consensus
AUUCAAAAUAUCUCUGCAGAUCUGUUGUUGUUCCUGGU_______GGCUUUGUUGCUUGUUGGCUUGUUGCAGCCGAAAGAUAACAGCAGCUCAUGGGCGGAGUG_____________
...........((((((.((.(((((((((((.............(((......)))..((((((......))))))..))))))))))).))....))))))............... (-24.58 = -25.10 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:44 2006